Contemporary environmental variation determines microbial diversity patterns in acid mine drainage

In Situ Evolutionary Rate Measurements Show Ecological Success of Recently Emerged Bacterial Hybrids

(2012) V. J. Denef et al.   SCIENCE

Biodiversity and Emerging Biogeography of the Neutrophilic Iron-Oxidizing Zetaproteobacteria

(2011) Sean M. McAllister et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Spatial and Temporal Analysis of the Microbial Community in the Tailings of a Pb-Zn Mine Generating Acidic Drainage

(2011) Li-Nan Huang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Geomicrobiology of La Zarza-Perrunal Acid Mine Effluent (Iberian Pyritic Belt, Spain)

(2011) Elena González-Toril et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

The bacterial biogeography of British soils

(2011) Robert I. Griffiths et al.   ENVIRONMENTAL MICROBIOLOGY

Biodiversity and geochemistry of an extremely acidic, low-temperature subterranean environment sustained by chemolithotrophy

(2011) Sakurako Kimura et al.   ENVIRONMENTAL MICROBIOLOGY

Quantitative proteomic analyses of the response of acidophilic microbial communities to different pH conditions

(2011) Christopher P Belnap et al.   ISME Journal

In-depth Characterization via Complementing Culture-Independent Approaches of the Microbial Community in an Acidic Hot Spring of the Colombian Andes

(2011) Laura C. Bohorquez et al.   MICROBIAL ECOLOGY

Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data

(2011) J. Raes et al.   Molecular Systems Biology

Drivers of bacterial  -diversity depend on spatial scale

(2011) J. B. H. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering

(2011) W. J. Sul et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Application of a DepositionalFaciesModel to an Acid Mine Drainage Site

(2010) Juliana F. Brown et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Environmental distribution of prokaryotic taxa

(2010) Javier Tamames et al.   BMC MICROBIOLOGY

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

New perspectives in acid mine drainage microbiology

(2010) K.B. Hallberg   HYDROMETALLURGY

GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity

(2010) Zhili He et al.   ISME Journal

AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature

(2010) Vincent J Denef et al.   ISME Journal

Microbial community structure across the tree of life in the extreme Río Tinto

(2010) Linda A Amaral-Zettler et al.   ISME Journal

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

Examining the global distribution of dominant archaeal populations in soil

(2010) Scott T Bates et al.   ISME Journal

Visualizing Acidophilic Microorganisms in Biofilm Communities Using Acid Stable Fluorescence Dyes

(2010) Sina Brockmann et al.   JOURNAL OF FLUORESCENCE

Ecological distribution and population physiology defined by proteomics in a natural microbial community

(2010) Ryan S Mueller et al.   Molecular Systems Biology

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

(2010) Jens Reeder et al.   NATURE METHODS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Archaea and bacteria with surprising microdiversity show shifts in dominance over 1,000-year time scales in hydrothermal chimneys

(2010) W. J. Brazelton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bar-Coded Pyrosequencing Reveals Shared Bacterial Community Properties along the Temperature Gradients of Two Alkaline Hot Springs in Yellowstone National Park

(2009) S. R. Miller et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biofilm Bacterial Community Structure in Streams Affected by Acid Mine Drainage

(2009) G. Lear et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Population Dynamics of Iron-Oxidizing Communities in Pilot Plants for the Treatment of Acid Mine Waters

(2009) Elke Heinzel et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Microbial diversity of boron-rich volcanic hot springs of  St. Lucia, Lesser Antilles

(2009) Lisa M. Stout et al.   FEMS MICROBIOLOGY ECOLOGY

Global ecological patterns in uncultured Archaea

(2009) Jean-Christophe Auguet et al.   ISME Journal

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Accurate determination of microbial diversity from 454 pyrosequencing data

(2009) Christopher Quince et al.   NATURE METHODS

Disintegration of the Ecological Community

(2008) Robert E. Ricklefs   AMERICAN NATURALIST

Bacterial Diversity in a Mine Water Treatment Plant

(2008) E. Heinzel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Differences in soil bacterial diversity: driven by contemporary disturbances or historical contingencies?

(2008) Yuan Ge et al.   ISME Journal

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

(2008) Micah Hamady et al.   NATURE METHODS

The influence of sex, handedness, and washing on the diversity of hand surface bacteria

(2008) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial community gene expression in ocean surface waters

(2008) J. Frias-Lopez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial Biogeography: From Taxonomy to Traits

(2008) J. L. Green et al.   SCIENCE

Comparison of ferric iron generation by different species of acidophilic bacteria immobilized in packed-bed reactors

(2008) Owen F. Rowe et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY