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Title
Comparative 3D genome organization in apicomplexan parasites
Authors
Keywords
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Journal
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume -, Issue -, Pages 201810815
Publisher
Proceedings of the National Academy of Sciences
Online
2019-02-06
DOI
10.1073/pnas.1810815116
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- (2015) Adrian B Hehl et al. BMC GENOMICS
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