Form and function of topologically associating genomic domains in budding yeast
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Form and function of topologically associating genomic domains in budding yeast
Authors
Keywords
-
Journal
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 114, Issue 15, Pages E3061-E3070
Publisher
Proceedings of the National Academy of Sciences
Online
2017-03-28
DOI
10.1073/pnas.1612256114
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C
- (2015) Tsung-Han S. Hsieh et al. CELL
- The Role of Chromosome Domains in Shaping the Functional Genome
- (2015) Tom Sexton et al. CELL
- Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program
- (2015) Vishnu Dileep et al. GENOME RESEARCH
- Condensin-driven remodelling of X chromosome topology during dosage compensation
- (2015) Emily Crane et al. NATURE
- DNA replication origin activation in space and time
- (2015) Michalis Fragkos et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- CTCF establishes discrete functional chromatin domains at theHoxclusters during differentiation
- (2015) Varun Narendra et al. SCIENCE
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- Topologically associating domains are stable units of replication-timing regulation
- (2014) Benjamin D. Pope et al. NATURE
- Cohesin-dependent globules and heterochromatin shape 3D genome architecture in S. pombe
- (2014) Takeshi Mizuguchi et al. NATURE
- Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes
- (2014) Wenxiu Ma et al. NATURE METHODS
- Genome Architecture: Domain Organization of Interphase Chromosomes
- (2013) Wendy A. Bickmore et al. CELL
- Transcription Factories: Genome Organization and Gene Regulation
- (2013) Argyris Papantonis et al. CHEMICAL REVIEWS
- Genome organization and long-range regulation of gene expression by enhancers
- (2013) Andrea Smallwood et al. CURRENT OPINION IN CELL BIOLOGY
- Genetic and epigenetic determinants of DNA replication origins, position and activation
- (2013) Marcel Méchali et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Cohesin-mediated interactions organize chromosomal domain architecture
- (2013) Sevil Sofueva et al. EMBO JOURNAL
- Location, location, location: it's all in the timing for replication origins
- (2013) O. M. Aparicio GENES & DEVELOPMENT
- The Hierarchy of the 3D Genome
- (2013) Johan H. Gibcus et al. MOLECULAR CELL
- The pluripotent genome in three dimensions is shaped around pluripotency factors
- (2013) Elzo de Wit et al. NATURE
- A high-resolution map of the three-dimensional chromatin interactome in human cells
- (2013) Fulai Jin et al. NATURE
- Spatial localization of co-regulated genes exceeds genomic gene clustering in the Saccharomyces cerevisiae genome
- (2013) Shay Ben-Elazar et al. NUCLEIC ACIDS RESEARCH
- The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation inSaccharomyces cerevisiae
- (2013) Miguel Cacho Teixeira et al. NUCLEIC ACIDS RESEARCH
- The 3D Organization of the Yeast Genome Correlates with Co-Expression and Reflects Functional Relations between Genes
- (2013) Dirar Homouz et al. PLoS One
- An Algorithm to Automate Yeast Segmentation and Tracking
- (2013) Andreas Doncic et al. PLoS One
- Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells
- (2013) J. Zuin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DNA Replication Timing
- (2013) N. Rhind et al. Cold Spring Harbor Perspectives in Biology
- Nuclear Organization and Genome Function
- (2012) Kevin Van Bortle et al. Annual Review of Cell and Developmental Biology
- Forkhead Transcription Factors Establish Origin Timing and Long-Range Clustering in S. cerevisiae
- (2012) Simon R.V. Knott et al. CELL
- Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome
- (2012) Tom Sexton et al. CELL
- Chromatin-dependent and -independent regulation of DNA replication origin activation in budding yeast
- (2012) Marko Lõoke et al. EMBO REPORTS
- Structure and Function in the Budding Yeast Nucleus
- (2012) A. Taddei et al. GENETICS
- Physical tethering and volume exclusion determine higher-order genome organization in budding yeast
- (2012) H. Tjong et al. GENOME RESEARCH
- Gene Density, Transcription, and Insulators Contribute to the Partition of the Drosophila Genome into Physical Domains
- (2012) Chunhui Hou et al. MOLECULAR CELL
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Spatial partitioning of the regulatory landscape of the X-inactivation centre
- (2012) Elphège P. Nora et al. NATURE
- Iterative correction of Hi-C data reveals hallmarks of chromosome organization
- (2012) Maxim Imakaev et al. NATURE METHODS
- 3D chromatin conformation correlates with replication timing and is conserved in resting cells
- (2012) Benoit Moindrot et al. NUCLEIC ACIDS RESEARCH
- Functional Centromeres Determine the Activation Time of Pericentric Origins of DNA Replication in Saccharomyces cerevisiae
- (2012) Thomas J. Pohl et al. PLoS Genetics
- FIMO: scanning for occurrences of a given motif
- (2011) Charles E. Grant et al. BIOINFORMATICS
- The fractal globule as a model of chromatin architecture in the cell
- (2011) Leonid A. Mirny CHROMOSOME RESEARCH
- Distinct Interactions Select and Maintain a Specific Cell Fate
- (2011) Andreas Doncic et al. MOLECULAR CELL
- Commitment to a Cellular Transition Precedes Genome-wide Transcriptional Change
- (2011) Umut Eser et al. MOLECULAR CELL
- Nascent transcript sequencing visualizes transcription at nucleotide resolution
- (2011) L. Stirling Churchman et al. NATURE
- Topoisomerase II binds nucleosome-free DNA and acts redundantly with topoisomerase I to enhance recruitment of RNA Pol II in budding yeast
- (2011) A. S. Sperling et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Eukaryotic Chromosome DNA Replication: Where, When, and How?
- (2010) Hisao Masai et al. Annual Review of Biochemistry
- Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types
- (2010) T. Ryba et al. GENOME RESEARCH
- A three-dimensional model of the yeast genome
- (2010) Zhijun Duan et al. NATURE
- Comparative Analysis of DNA Replication Timing Reveals Conserved Large-Scale Chromosomal Architecture
- (2010) Eitan Yaffe et al. PLoS Genetics
- The transcriptional network activated by Cln3 cyclin at the G1-to-S transition of the yeast cell cycle
- (2010) Francisco Ferrezuelo et al. GENOME BIOLOGY
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
- Positive feedback of G1 cyclins ensures coherent cell cycle entry
- (2008) Jan M. Skotheim et al. NATURE
- High-resolution statistical mapping reveals gene territories in live yeast
- (2008) Axel B Berger et al. NATURE METHODS
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started