Divergent microbial communities in groundwater and overlying soils exhibit functional redundancy for plant-polysaccharide degradation

SIPSim: A Modeling Toolkit to Predict Accuracy and Aid Design of DNA-SIP Experiments

(2018) Nicholas D. Youngblut et al.   Frontiers in Microbiology

Nitrogen Loss from Pristine Carbonate-Rock Aquifers of the Hainich Critical Zone Exploratory (Germany) Is Primarily Driven by Chemolithoautotrophic Anammox Processes

(2017) Swatantar Kumar et al.   Frontiers in Microbiology

Members of the Candidate Phyla Radiation are functionally differentiated by carbon- and nitrogen-cycling capabilities

(2017) R. E. Danczak et al.   Microbiome

Dissolved organic carbon transformations and microbial community response to variations in recharge waters in a shallow carbonate aquifer

(2016) Katherine J. Cooper et al.   BIOGEOCHEMISTRY

Connectivity to the surface determines diversity patterns in subsurface aquifers of the Fennoscandian shield

(2016) Valerie Hubalek et al.   ISME Journal

Fine Spatial Scale Variation of Soil Microbial Communities under European Beech and Norway Spruce

(2016) Heiko Nacke et al.   Frontiers in Microbiology

Unearthing the Ecology of Soil Microorganisms Using a High Resolution DNA-SIP Approach to Explore Cellulose and Xylose Metabolism in Soil

(2016) Charles Pepe-Ranney et al.   Frontiers in Microbiology

Analysis of five complete genome sequences for members of the class Peribacteria in the recently recognized Peregrinibacteria bacterial phylum

(2016) Karthik Anantharaman et al.   PeerJ

Quantitative Microbial Ecology through Stable Isotope Probing

(2015) Bruce A. Hungate et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Large Fractions of CO2-Fixing Microorganisms in Pristine Limestone Aquifers Appear To Be Involved in the Oxidation of Reduced Sulfur and Nitrogen Compounds

(2015) Martina Herrmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Unusual biology across a group comprising more than 15% of domain Bacteria

(2015) Christopher T. Brown et al.   NATURE

The reduced genomes of Parcubacteria (OD1) contain signatures of a symbiotic lifestyle

(2015) William C. Nelson et al.   Frontiers in Microbiology

Oxygen availability and distance to surface environments determine community composition and abundance of ammonia-oxidizing prokaroytes in two superimposed pristine limestone aquifers in the Hainich region, Germany

(2014) Sebastian Opitz et al.   FEMS MICROBIOLOGY ECOLOGY

Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer

(2014) Kelly C Wrighton et al.   ISME Journal

Implications of streamlining theory for microbial ecology

(2014) Stephen J Giovannoni et al.   ISME Journal

The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification

(2014) T.B.K. Reddy et al.   NUCLEIC ACIDS RESEARCH

rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development

(2014) Steven F. Stoddard et al.   NUCLEIC ACIDS RESEARCH

Omics-based interpretation of synergism in a soil-derived cellulose-degrading microbial community

(2014) Yizhuang Zhou et al.   Scientific Reports

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Linking microbial community structure to β-glucosidic function in soil aggregates

(2013) Vanessa L Bailey et al.   ISME Journal

Phagotrophic Protist Diversity in the Groundwater of a Karstified Aquifer - Morphological and Molecular Analysis

(2013) Ute Risse-Buhl et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

(2013) Mads Albertsen et al.   NATURE BIOTECHNOLOGY

Selective transport of plant root-associated bacterial populations in agricultural soils upon snowmelt

(2013) Dörte Dibbern et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil Microbe Active Community Composition and Capability of Responding to Litter Addition after 12 Years of No Inputs

(2012) Stephanie Yarwood et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Decomposition of biogas residues in soil and their effects on microbial growth kinetics and enzyme activities

(2012) Ruirui Chen et al.   BIOMASS & BIOENERGY

Predominance of thaumarchaeal ammonia oxidizer abundance and transcriptional activity in an acidic fen

(2012) Martina Herrmann et al.   ENVIRONMENTAL MICROBIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Functional microbial community response to nutrient pulses by artificial groundwater recharge practice in surface soils and subsoils

(2010) Kirsten Schütz et al.   FEMS MICROBIOLOGY ECOLOGY

Exoenzyme activities as indicators of dissolved organic matter composition in the hyporheic zone of a floodplain river

(2010) SANDRA M. CLINTON et al.   FRESHWATER BIOLOGY

Temperature-associated increases in the global soil respiration record

(2010) Ben Bond-Lamberty et al.   NATURE

Novel Features of the Polysaccharide-Digesting Gliding Bacterium Flavobacterium johnsoniae as Revealed by Genome Sequence Analysis

(2009) M. J. McBride et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metabolic responses of novel cellulolytic and saccharolytic agricultural soil Bacteria to oxygen

(2009) Stefanie Schellenberger et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial biodiversity in groundwater ecosystems

(2008) C. GRIEBLER et al.   FRESHWATER BIOLOGY

Percolation and Particle Transport in the Unsaturated Zone of a Karst Aquifer

(2008) Michiel Pronk et al.   Groundwater

Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea

(2008) Sarah M Sowell et al.   ISME Journal

Extracellular enzyme activities and nutrient availability during artificial groundwater recharge

(2008) Reija E. Kolehmainen et al.   WATER RESEARCH