SIPSim: A Modeling Toolkit to Predict Accuracy and Aid Design of DNA-SIP Experiments

Unearthing the Ecology of Soil Microorganisms Using a High Resolution DNA-SIP Approach to Explore Cellulose and Xylose Metabolism in Soil

(2016) Charles Pepe-Ranney et al.   Frontiers in Microbiology

Quantitative Microbial Ecology through Stable Isotope Probing

(2015) Bruce A. Hungate et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Non-cyanobacterial diazotrophs mediate dinitrogen fixation in biological soil crusts during early crust formation

(2015) Charles Pepe-Ranney et al.   ISME Journal

Intra-genomic variation in G + C content and its implications for DNA stable isotope probing

(2014) Nicholas D. Youngblut et al.   Environmental Microbiology Reports

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

High-Sensitivity Stable-Isotope Probing by a Quantitative Terminal Restriction Fragment Length Polymorphism Protocol

(2011) Peter Andeer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial seed banks: the ecological and evolutionary implications of dormancy

(2011) Jay T. Lennon et al.   NATURE REVIEWS MICROBIOLOGY

Use of Inorganic and Organic Nitrogen by Synechococcus spp. and Diatoms on the West Florida Shelf as Measured Using Stable Isotope Probing

(2009) B. Wawrik et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

GenBank

(2009) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

MFEprimer: multiple factor evaluation of the specificity of PCR primers

(2008) Wubin Qu et al.   BIOINFORMATICS

DNA-based stable isotope probing: a link between community structure and function

(2008) Ondrej Uhlík et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Importance of DNA quality in comparative soil microbial community structure analyses

(2008) Dwipendra Thakuria et al.   SOIL BIOLOGY & BIOCHEMISTRY