Ocimum metabolomics in response to abiotic stresses: Cold, flood, drought and salinity

WSL5, a pentatricopeptide repeat protein, is essential for chloroplast biogenesis in rice under cold stress

(2018) Xi Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Preformed and induced mechanisms underlies the differential responses of Prunus rootstock to hypoxia

(2018) María J. Rubio-Cabetas et al.   JOURNAL OF PLANT PHYSIOLOGY

Transcriptome changes induced by abiotic stresses in Artemisia annua

(2018) Divya Vashisth et al.   Scientific Reports

De Novo Transcriptome Sequencing and the Hypothetical Cold Response Mode of Saussurea involucrata in Extreme Cold Environments

(2017) Jin Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Comparative glandular trichome transcriptome-based gene characterization reveals reasons for differential (−)-menthol biosynthesis in Mentha species

(2017) Md Qussen Akhtar et al.   PHYSIOLOGIA PLANTARUM

The effect of drought stress on the expression of key genes involved in the biosynthesis of phenylpropanoids and essential oil components in basil ( Ocimum basilicum L.)

(2017) Babak Abdollahi Mandoulakani et al.   PHYTOCHEMISTRY

Functional Analysis of Two Flavanone-3-Hydroxylase Genes from Camellia sinensis: A Critical Role in Flavonoid Accumulation

(2017) Yahui Han et al.   Genes

Identification and characterization of a novel abiotic stress responsive sulphotransferase gene (OsSOT9) from rice

(2016) Xufeng Cao et al.   BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT

Isolation of a novel leucine-rich repeat receptor-like kinase (OsLRR2) gene from rice and analysis of its relation to abiotic stress responses

(2016) Yongrong Liao et al.   BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT

De novo assembly and analysis of the transcriptome of Ocimum americanum var. pilosum under cold stress

(2016) Xiangqiang Zhan et al.   BMC GENOMICS

Role of Cyclic Nucleotide Gated Channels in Stress Management in Plants

(2016) Saroj K. Jha et al.   CURRENT GENOMICS

Drought-Responsive Mechanisms in Plant Leaves Revealed by Proteomics

(2016) Xiaoli Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Proteomic analysis of salt-responsive proteins in oat roots (Avena sativaL.)

(2016) Jianhui Bai et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Infiltration-RNAseq: transcriptome profiling of Agrobacterium-mediated infiltration of transcription factors to discover gene function and expression networks in plants

(2016) Donna M. Bond et al.   Plant Methods

Overexpression of a Pathogenesis-Related Protein 10 Enhances Biotic and Abiotic Stress Tolerance in Rice

(2016) Jingni Wu et al.   Plant Pathology Journal

Overexpression of calmodulin-like (ShCML44) stress-responsive gene from Solanum habrochaites enhances tolerance to multiple abiotic stresses

(2016) Shoaib Munir et al.   Scientific Reports

Transcription Factors and Plants Response to Drought Stress: Current Understanding and Future Directions

(2016) Rohit Joshi et al.   Frontiers in Plant Science

Unravelling the genome of Holy basil: an “incomparable” “elixir of life” of traditional Indian medicine

(2015) Shubhra Rastogi et al.   BMC GENOMICS

Staying green postharvest: how three mutations in theArabidopsischlorophyllbreductase geneNYC1delay degreening by distinct mechanisms

(2015) Rubina Jibran et al.   JOURNAL OF EXPERIMENTAL BOTANY

Quantitative proteomics of nuclear phosphoproteins in the root tip of soybean during the initial stages of flooding stress

(2015) Xiaojian Yin et al.   Journal of Proteomics

The Arabidopsis root stele transporter NPF2.3 contributes to nitrate translocation to shoots under salt stress

(2015) Christelle Taochy et al.   PLANT JOURNAL

Mechanisms on Boron-Induced Alleviation of Aluminum-Toxicity in Citrus grandis Seedlings at a Transcriptional Level Revealed by cDNA-AFLP Analysis

(2015) Xin-Xing Zhou et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

A genome-wide survey of homeodomain-leucine zipper genes and analysis of cold-responsive HD-Zip I members’ expression in tomato

(2014) Zhenzhu Zhang et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

De novo sequencing and comparative analysis of holy and sweet basil transcriptomes

(2014) Shubhra Rastogi et al.   BMC GENOMICS

RNA sequencing-mediated transcriptome analysis of rice plants in endoplasmic reticulum stress conditions

(2014) Yuhya Wakasa et al.   BMC PLANT BIOLOGY

Isolation and expression studies of the ERD15 gene involved in drought-stressed responses

(2014) H.H. Shao et al.   GENETICS AND MOLECULAR RESEARCH

Analysis of flooding-responsive proteins localized in the nucleus of soybean root tips

(2014) Setsuko Komatsu et al.   MOLECULAR BIOLOGY REPORTS

Structural alteration of cell wall pectins accompanies pea development in response to cold

(2014) Laëtitia Baldwin et al.   PHYTOCHEMISTRY

Response of plants to water stress

(2014) Yuriko Osakabe et al.   Frontiers in Plant Science

The physiological response of Artemisia annua L. to salt stress and salicylic acid treatment

(2014) Lin Li et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Functional analysis of BT4 of Arabidopsis thaliana in resistance against Botrytis cinerea

(2013) Cong-Cong Hao et al.   AUSTRALASIAN PLANT PATHOLOGY

Transcriptome analysis of heat stress response in switchgrass (Panicum virgatum L.)

(2013) Yong-Fang Li et al.   BMC PLANT BIOLOGY

Identification of Indicator Proteins Associated with Flooding Injury in Soybean Seedlings Using Label-free Quantitative Proteomics

(2013) Yohei Nanjo et al.   JOURNAL OF PROTEOME RESEARCH

Stress Enhances the Synthesis of Secondary Plant Products: The Impact of Stress-Related Over-Reduction on the Accumulation of Natural Products

(2013) Dirk Selmar et al.   PLANT AND CELL PHYSIOLOGY

4-Coumarate: CoA Ligase Partitions Metabolites for Eugenol Biosynthesis

(2013) Shubhra Rastogi et al.   PLANT AND CELL PHYSIOLOGY

Functional Investigation of the Plant-Specific Long Coiled-Coil Proteins PAMP-INDUCED COILED-COIL (PICC) and PICC-LIKE (PICL) in Arabidopsis thaliana

(2013) Sowmya Venkatakrishnan et al.   PLoS One

Characterization and Expression of a GDSL-Like Lipase Gene from Brassica napus in Nicotiana benthamiana

(2013) Xiaoli Tan et al.   PROTEIN JOURNAL

The effect of different irrigation water levels on yield and quality characteristics of purple basil (Ocimum basilicum L.)

(2012) Sıdıka Ekren et al.   AGRICULTURAL WATER MANAGEMENT

De novo sequencing and characterization of Picrorhiza kurrooa transcriptome at two temperatures showed major transcriptome adjustments

(2012) Parul Gahlan et al.   BMC GENOMICS

The interaction of plant biotic and abiotic stresses: from genes to the field

(2012) N. J. Atkinson et al.   JOURNAL OF EXPERIMENTAL BOTANY

1-Aminocyclopropane-1-carboxylic acid (ACC) deaminase-containing rhizobacteria protect Ocimum sanctum plants during waterlogging stress via reduced ethylene generation

(2012) Deepti Barnawal et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

FERONIA receptor kinase pathway suppresses abscisic acid signaling in Arabidopsis by activating ABI2 phosphatase

(2012) F. Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Calmodulin and calmodulin-like proteins in plant calcium signaling

(2011) Alexandre Perochon et al.   BIOCHIMIE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Characterization of novel F-box proteins in plants induced by biotic and abiotic stress

(2011) María Teresa Maldonado-Calderón et al.   PLANT SCIENCE

Transcriptional Regulation of Ribosome Components Are Determined by Stress According to Cellular Compartments in Arabidopsis thaliana

(2011) Rodnay Sormani et al.   PLoS One

Drought effects on polyphenol composition and antioxidant activities in aerial parts of Salvia officinalis L.

(2010) Iness Bettaieb et al.   ACTA PHYSIOLOGIAE PLANTARUM

Abiotic and Biotic Stresses and Changes in the Lignin Content and Composition in Plants

(2010) Jullyana Cristina Magalhães Silva Moura et al.   Journal of Integrative Plant Biology

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Physiological responses to NaCl stress in three wild species of potato in vitro

(2009) Fatemeh Daneshmand et al.   ACTA PHYSIOLOGIAE PLANTARUM

Salinity-induced changes in essential oil, pigments and salts accumulation in sweet basil (Ocimum basilicum) in relation to alterations of morphological development

(2009) N. Bernstein et al.   ANNALS OF APPLIED BIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Phenylpropanoid Biosynthesis

(2009) Thomas Vogt   Molecular Plant

The Arabidopsis 26S Proteasome Subunit RPN1a is Required for Optimal Plant Growth and Stress Responses

(2009) Songhu Wang et al.   PLANT AND CELL PHYSIOLOGY

Plant drought stress: effects, mechanisms and management

(2008) M. Farooq et al.   Agronomy for Sustainable Development

Physiology and biochemistry of waterlogging tolerance in plants

(2008) R. K. Sairam et al.   BIOLOGIA PLANTARUM

Heat stress-responsive transcriptome analysis in heat susceptible and tolerant wheat (Triticum aestivum L.) by using Wheat Genome Array

(2008) Dandan Qin et al.   BMC GENOMICS

Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis

(2008) Tongtong Xue et al.   BMC GENOMICS

ESKIMO1 is a key gene involved in water economy as well as cold acclimation and salt tolerance

(2008) Oumaya Bouchabke-Coussa et al.   BMC PLANT BIOLOGY

Global Switches and Fine-Tuning—ABA Modulates Plant Pathogen Defense

(2008) Bob Asselbergh et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Mutations in AtCML9, a calmodulin-like protein fromArabidopsis thaliana, alter plant responses to abiotic stress and abscisic acid

(2008) Fabienne Magnan et al.   PLANT JOURNAL