New insights into the structures and interactions of bacterial Y-family DNA polymerases
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
New insights into the structures and interactions of bacterial Y-family DNA polymerases
Authors
Keywords
-
Journal
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2019-03-20
DOI
10.1093/nar/gkz198
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Translesion and Repair DNA Polymerases: Diverse Structure and Mechanism
- (2018) Wei Yang et al. Annual Review of Biochemistry
- Structure, function, and mechanism of the core circadian clock in cyanobacteria
- (2018) Jeffrey A. Swan et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core
- (2018) Lukas Zimmermann et al. JOURNAL OF MOLECULAR BIOLOGY
- Non-canonical processing of DNA photodimers with Bacillus subtilis UV-endonuclease YwjD, 5′→3′ exonuclease YpcP and low-fidelity DNA polymerases YqjH and YqjW
- (2018) Adriana G. Patlán et al. DNA REPAIR
- UFBoot2: Improving the Ultrafast Bootstrap Approximation
- (2017) Diep Thi Hoang et al. MOLECULAR BIOLOGY AND EVOLUTION
- The structure and function of an RNA polymerase interaction domain in the PcrA/UvrD helicase
- (2017) Kelly Sanders et al. NUCLEIC ACIDS RESEARCH
- Automatic structure prediction of oligomeric assemblies using Robetta in CASP12
- (2017) Hahnbeom Park et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- VoroMQA: Assessment of protein structure quality using interatomic contact areas
- (2017) Kliment Olechnovič et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Bacterial RadA is a DnaB-type helicase interacting with RecA to promote bidirectional D-loop extension
- (2017) Léa Marie et al. Nature Communications
- Mutations for Worse or Better: Low-Fidelity DNA Synthesis by SOS DNA Polymerase V Is a Tightly Regulated Double-Edged Sword
- (2016) Malgorzata Jaszczur et al. BIOCHEMISTRY
- Insights into the complex levels of regulation imposed on Escherichia coli DNA polymerase V
- (2016) Myron F. Goodman et al. DNA REPAIR
- Dali server update
- (2016) Liisa Holm et al. NUCLEIC ACIDS RESEARCH
- Uniclust databases of clustered and deeply annotated protein sequences and alignments
- (2016) Milot Mirdita et al. NUCLEIC ACIDS RESEARCH
- Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
- (2016) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Functional Sites Induce Long-Range Evolutionary Constraints in Enzymes
- (2016) Benjamin R. Jack et al. PLOS BIOLOGY
- Point mutations in Escherichia coli DNA pol V that confer resistance to non-cognate DNA damage also alter protein–protein interactions
- (2015) Lisa A. Hawver et al. MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS
- The I-TASSER Suite: protein structure and function prediction
- (2015) Jianyi Yang et al. NATURE METHODS
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- An underlying mechanism for the increased mutagenesis of lagging-strand genes inBacillus subtilis
- (2015) Samuel Million-Weaver et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A RecA Protein Surface Required for Activation of DNA Polymerase V
- (2015) Angela J. Gruber et al. PLoS Genetics
- UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches
- (2014) B. E. Suzek et al. BIOINFORMATICS
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Characterization of three mycobacterial DinB (DNA polymerase IV) paralogs highlights DinB2 as naturally adept at ribonucleotide incorporation
- (2014) Heather Ordonez et al. NUCLEIC ACIDS RESEARCH
- DNA polymerase V activity is autoregulated by a novel intrinsic DNA-dependent ATPase
- (2014) Aysen L Erdem et al. eLife
- CARF and WYL domains: ligand-binding regulators of prokaryotic defense systems
- (2014) Kira S. Makarova et al. Frontiers in Genetics
- Novel autoproteolytic and DNA-damage sensing components in the bacterial SOS response and oxidized methylcytosine-induced eukaryotic DNA demethylation systems
- (2013) L Aravind et al. Biology Direct
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Scalable web services for the PSIPRED Protein Analysis Workbench
- (2013) Daniel W. A. Buchan et al. NUCLEIC ACIDS RESEARCH
- Structure of the Mtb CarD/RNAP β-Lobes Complex Reveals the Molecular Basis of Interaction and Presents a Distinct DNA-Binding Domain for Mtb CarD
- (2013) Gulcin Gulten et al. STRUCTURE
- Breaking the rules: bacteria that use several DNA polymerase IIIs
- (2011) Charles S McHenry EMBO REPORTS
- HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment
- (2011) Michael Remmert et al. NATURE METHODS
- Translesion-synthesis DNA polymerases participate in replication of the telomeres in Streptomyces
- (2011) Hsiu-Hui Tsai et al. NUCLEIC ACIDS RESEARCH
- A new model for SOS-induced mutagenesis: how RecA protein activates DNA polymerase V
- (2010) Meghna Patel et al. CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY
- Role of the DinB Homologs Rv1537 and Rv3056 in Mycobacterium tuberculosis
- (2010) B. D. Kana et al. JOURNAL OF BACTERIOLOGY
- Essential roles for imuA'- and imuB-encoded accessory factors in DnaE2-dependent mutagenesis in Mycobacterium tuberculosis
- (2010) D. F. Warner et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- Jalview Version 2--a multiple sequence alignment editor and analysis workbench
- (2009) A. M. Waterhouse et al. BIOINFORMATICS
- Role of the Y-Family DNA Polymerases YqjH and YqjW in Protecting Sporulating Bacillus subtilis Cells from DNA Damage
- (2009) Andrea M. Rivas-Castillo et al. CURRENT MICROBIOLOGY
- Cyanobacteria contain a structural homologue of the Hfq protein with altered RNA-binding properties
- (2009) Andreas Bøggild et al. FEBS Journal
- The active form of DNA polymerase V is UmuD′2C–RecA–ATP
- (2009) Qingfei Jiang et al. NATURE
- Biochemical basis for the essential genetic requirements of RecA and the -clamp in Pol V activation
- (2009) S. Fujii et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Y-Family DNA polymerases may use two different dNTP shapes for insertion: A hypothesis and its implications
- (2008) Sushil Chandani et al. JOURNAL OF MOLECULAR GRAPHICS & MODELLING
- An Improved General Amino Acid Replacement Matrix
- (2008) S. Q. Le et al. MOLECULAR BIOLOGY AND EVOLUTION
- Mechanism of homologous recombination from the RecA–ssDNA/dsDNA structures
- (2008) Zhucheng Chen et al. NATURE
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started