Carboxydotrophy potential of uncultivated Hydrothermarchaeota from the subseafloor crustal biosphere

Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle

(2018) Karthik Anantharaman et al.   ISME Journal

Evolutionary history of carbon monoxide dehydrogenase/acetyl-CoA synthase, one of the oldest enzymatic complexes

(2018) Panagiotis S. Adam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Archaellum: An Update on the Unique Archaeal Motility Structure

(2018) Sonja-Verena Albers et al.   TRENDS IN MICROBIOLOGY

Marsarchaeota are an aerobic archaeal lineage abundant in geothermal iron oxide microbial mats

(2018) Zackary J. Jay et al.   Nature Microbiology

Archaeal biofilm formation

(2018) Marleen van Wolferen et al.   NATURE REVIEWS MICROBIOLOGY

dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication

(2017) Matthew R Olm et al.   ISME Journal

The growing tree of Archaea: new perspectives on their diversity, evolution and ecology

(2017) Panagiotis S Adam et al.   ISME Journal

Genomic reconstruction of multiple lineages of uncultured benthic archaea suggests distinct biogeochemical roles and ecological niches

(2017) C S Lazar et al.   ISME Journal

Asgard archaea illuminate the origin of eukaryotic cellular complexity

(2017) Katarzyna Zaremba-Niedzwiedzka et al.   NATURE

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

(2017) Robert M Bowers et al.   NATURE BIOTECHNOLOGY

Integrative modeling of gene and genome evolution roots the archaeal tree of life

(2017) Tom A. Williams et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic exploration of the diversity, ecology, and evolution of the archaeal domain of life

(2017) Anja Spang et al.   SCIENCE

In situ click chemistry generation of cyclooxygenase-2 inhibitors

(2017) Atul Bhardwaj et al.   Nature Communications

Geochemical bioenergetics during low-temperature serpentinization: An example from the Samail ophiolite, Sultanate of Oman

(2017) Peter A. Canovas et al.   Journal of Geophysical Research-Biogeosciences

Methanogenesis and the Wood–Ljungdahl Pathway: An Ancient, Versatile, and Fragile Association

(2016) Guillaume Borrel et al.   Genome Biology and Evolution

Novel microbial assemblages inhabiting crustal fluids within mid-ocean ridge flank subsurface basalt

(2016) Sean P Jungbluth et al.   ISME Journal

IMG/M: integrated genome and metagenome comparative data analysis system

(2016) I-Min A. Chen et al.   NUCLEIC ACIDS RESEARCH

The physiology and habitat of the last universal common ancestor

(2016) Madeline C. Weiss et al.   Nature Microbiology

A new view of the tree of life

(2016) Laura A. Hug et al.   Nature Microbiology

Metabolic traits of an uncultured archaeal lineage -MSBL1- from brine pools of the Red Sea

(2016) Romano Mwirichia et al.   Scientific Reports

Ultrastructural Characterization of the Lower Motor System in a Mouse Model of Krabbe Disease

(2016) Valentina Cappello et al.   Scientific Reports

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Complex archaea that bridge the gap between prokaryotes and eukaryotes

(2015) Anja Spang et al.   NATURE

The two-domain tree of life is linked to a new root for the Archaea

(2015) Kasie Raymann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics

(2015) P. N. Evans et al.   SCIENCE

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)

(2015) Marcel Huntemann et al.   Standards in Genomic Sciences

Assessment of the Carbon Monoxide Metabolism of the Hyperthermophilic Sulfate-Reducing ArchaeonArchaeoglobus fulgidusVC-16 by Comparative Transcriptome Analyses

(2015) William P. Hocking et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Pathways and Bioenergetics of Anaerobic Carbon Monoxide Fermentation

(2015) Martijn Diender et al.   Frontiers in Microbiology

Activity and phylogenetic diversity of sulfate-reducing microorganisms in low-temperature subsurface fluids within the upper oceanic crust

(2015) Alberto Robador et al.   Frontiers in Microbiology

Cytochromes c in Archaea: distribution, maturation, cell architecture, and the special case of Ignicoccus hospitalis

(2015) Arnulf Kletzin et al.   Frontiers in Microbiology

Anvi’o: an advanced analysis and visualization platform for ‘omics data

(2015) A. Murat Eren et al.   PeerJ

New Mode of Energy Metabolism in the Seventh Order of Methanogens as Revealed by Comparative Genome Analysis of “Candidatus Methanoplasma termitum”

(2014) Kristina Lang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Dissolved hydrogen and methane in the oceanic basaltic biosphere

(2014) Huei-Ting Lin et al.   EARTH AND PLANETARY SCIENCE LETTERS

Binning metagenomic contigs by coverage and composition

(2014) Johannes Alneberg et al.   NATURE METHODS

The origin of methanethiol in midocean ridge hydrothermal fluids

(2014) E. P. Reeves et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogeny and phylogeography of functional genes shared among seven terrestrial subsurface metagenomes reveal N-cycling and microbial evolutionary relationships

(2014) Maggie C. Y. Lau et al.   Frontiers in Microbiology

Identification of key components in the energy metabolism of the hyperthermophilic sulfate-reducing archaeon Archaeoglobus fulgidus by transcriptome analyses

(2014) William P. Hocking et al.   Frontiers in Microbiology

Seawater recharge into oceanic crust: IODP Exp 327 Site U1363 Grizzly Bare outcrop

(2013) C. Geoffrey Wheat et al.   GEOCHEMISTRY GEOPHYSICS GEOSYSTEMS

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Gene expression in the deep biosphere

(2013) William D. Orsi et al.   NATURE

Microbial life under extreme energy limitation

(2013) Tori M. Hoehler et al.   NATURE REVIEWS MICROBIOLOGY

Evidence for Microbial Carbon and Sulfur Cycling in Deeply Buried Ridge Flank Basalt

(2013) M. A. Lever et al.   SCIENCE

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Energy yields from chemolithotrophic metabolisms in igneous basement of the Juan de Fuca ridge flank system

(2012) Jason Boettger et al.   CHEMICAL GEOLOGY

Thermodynamic limitations on microbially catalyzed reaction rates

(2012) Douglas E. LaRowe et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Inorganic chemistry, gas compositions and dissolved organic carbon in fluids from sedimented young basaltic crust on the Juan de Fuca Ridge flanks

(2012) Huei-Ting Lin et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Microbial diversity within basement fluids of the sediment-buried Juan de Fuca Ridge flank

(2012) Sean P Jungbluth et al.   ISME Journal

Hydrogen-limited growth of hyperthermophilic methanogens at deep-sea hydrothermal vents

(2012) H. C. Ver Eecke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Trade-Offs of Chemotactic Foraging in Turbulent Water

(2012) J. R. Taylor et al.   SCIENCE

Microbial Ecology of the Dark Ocean above, at, and below the Seafloor

(2011) B. N. Orcutt et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Comparative Study of Subseafloor Microbial Community Structures in Deeply Buried Coral Fossils and Sediment Matrices from the Challenger Mound in the Porcupine Seabight

(2011) Tatsuhiko Hoshino et al.   Frontiers in Microbiology

Subseafloor Ocean Crust Microbial Observatories: Development of FLOCS (FLow-through Osmo Colonization System) and Evaluation of Borehole Construction Materials

(2010) Beth Orcutt et al.   GEOMICROBIOLOGY JOURNAL

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Enigmatic, ultrasmall, uncultivated Archaea

(2010) B. J. Baker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

‘That which does not kill us only makes us stronger’: the role of carbon monoxide in thermophilic microbial consortia

(2009) Stephen M. Techtmann et al.   ENVIRONMENTAL MICROBIOLOGY

Mapping the Tree of Life: Progress and Prospects

(2009) N. R. Pace   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods

(2009) P. G. Foster et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES