JmjC Domain-Encoding Genes Are Conserved in Highly Regenerative Metazoans and Are Associated with Planarian Whole-Body Regeneration

Prospectively Isolated Tetraspanin + Neoblasts Are Adult Pluripotent Stem Cells Underlying Planaria Regeneration

(2018) An Zeng et al.   CELL

JMJD1C Ensures Mouse Embryonic Stem Cell Self-Renewal and Somatic Cell Reprogramming through Controlling MicroRNA Expression

(2017) Feng Xiao et al.   Stem Cell Reports

A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

(2016) Amos A. Schaffer et al.   BMC GENOMICS

Fgf signalling controls diverse aspects of fin regeneration

(2016) Eri Shibata et al.   DEVELOPMENT

Cooperative inputs of Bmp and Fgf signaling induce tail regeneration in urodele amphibians

(2016) Aki Makanae et al.   DEVELOPMENTAL BIOLOGY

Inheritance of a Nuclear PIWI from Pluripotent Stem Cells by Somatic Descendants Ensures Differentiation by Silencing Transposons in Planarian

(2016) Norito Shibata et al.   DEVELOPMENTAL CELL

Histone H3K36 trimethylation is essential for multiple silencing mechanisms in fission yeast

(2016) Shota Suzuki et al.   NUCLEIC ACIDS RESEARCH

FGF Signaling Is Required for Lens Regeneration in Xenopus laevis

(2016) Lisa Fukui et al.   BIOLOGICAL BULLETIN

SmedGD 2.0: TheSchmidtea mediterraneagenome database

(2015) Sofia M.C. Robb et al.   GENESIS

KdmA, a histone H3 demethylase with bipartite function, differentially regulates primary and secondary metabolism inAspergillus nidulans

(2015) Agnieszka Gacek-Matthews et al.   MOLECULAR MICROBIOLOGY

Hemichordate genomes and deuterostome origins

(2015) Oleg Simakov et al.   NATURE

Regeneration in spiralians: evolutionary patterns and developmental processes

(2015) Alexandra E. Bely et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Tissue Regeneration and Biomineralization in Sea Urchins: Role of Notch Signaling and Presence of Stem Cell Markers

(2015) Helena C. Reinardy et al.   PLoS One

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Early Events in Annelid Regeneration: A Cellular Perspective

(2014) A. E. Bely   INTEGRATIVE AND COMPARATIVE BIOLOGY

JMJD5 Regulates Cell Cycle and Pluripotency in Human Embryonic Stem Cells

(2014) Hui Zhu et al.   STEM CELLS

TCC: an R package for comparing tag count data with robust normalization strategies

(2013) Jianqiang Sun et al.   BMC BIOINFORMATICS

Specialized progenitors and regeneration

(2013) P. W. Reddien   DEVELOPMENT

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Comparative transcriptome analysis between planarian Dugesia japonica and other platyhelminth species

(2012) Osamu Nishimura et al.   BMC GENOMICS

Survey of the differences between regenerative and non-regenerative animals

(2012) Kiyokazu Agata et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

The H3K27 demethylase Utx regulates somatic and germ cell epigenetic reprogramming

(2012) Abed AlFatah Mansour et al.   NATURE

The Evolution of the Wnt Pathway

(2012) T. W. Holstein   Cold Spring Harbor Perspectives in Biology

Epigenetic gene regulation by plant Jumonji group of histone demethylase

(2011) Xiangsong Chen et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

ERK signaling controls blastema cell differentiation during planarian regeneration

(2011) J. Tasaki et al.   DEVELOPMENT

Deacetylation and methylation at histone H3 lysine 9 (H3K9) coordinate chromosome condensation during cell cycle progression

(2011) Jin-Ah Park et al.   MOLECULES AND CELLS

Vertebrate-like regeneration in the invertebrate chordate amphioxus

(2011) I. M. L. Somorjai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-cell gene profiling of planarian stem cells using fluorescent activated cell sorting and its “index sorting” function for stem cell research

(2010) Tetsutaro Hayashi et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

The dynamic genome of Hydra

(2010) Jarrod A. Chapman et al.   NATURE

Jumonji domain protein JMJD5 functions in both the plant and human circadian systems

(2010) M. A. Jones et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

KDM8, a H3K36me2 histone demethylase that acts in the cyclin A1 coding region to regulate cancer cell proliferation

(2010) D. A. Hsia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Jarid2/Jumonji Coordinates Control of PRC2 Enzymatic Activity and Target Gene Occupancy in Pluripotent Cells

(2009) Jamy C. Peng et al.   CELL

Jumonji Modulates Polycomb Activity and Self-Renewal versus Differentiation of Stem Cells

(2009) Xiaohua Shen et al.   CELL

Histone H3 lysine 4 (H3K4) methylation in development and differentiation

(2009) Joel C. Eissenberg et al.   DEVELOPMENTAL BIOLOGY

Evolution of animal regeneration: re-emergence of a field

(2009) Alexandra E. Bely et al.   TRENDS IN ECOLOGY & EVOLUTION

The amphioxus genome and the evolution of the chordate karyotype

(2008) Nicholas H. Putnam et al.   NATURE