Hemichordate genomes and deuterostome origins

Scenarios for the making of vertebrates

(2015) Nicholas D. Holland et al.   NATURE

The deuterostome context of chordate origins

(2015) Christopher J. Lowe et al.   NATURE

Phylogenomic Resolution of the Hemichordate and Echinoderm Clade

(2014) Johanna T. Cannon et al.   CURRENT BIOLOGY

Whole-Body Acoel Regeneration Is Controlled by Wnt and Bmp-Admp Signaling

(2014) Mansi Srivastava et al.   CURRENT BIOLOGY

Genomic organization of Hox and ParaHox clusters in the echinoderm,Acanthaster planci

(2014) Kenneth W. Baughman et al.   GENESIS

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads

(2014) Rei Kajitani et al.   GENOME RESEARCH

Sequencing and analysis of the transcriptome of the acorn worm Ptychodera flava, an indirect developing hemichordate

(2014) Shu-Hwa Chen et al.   Marine Genomics

Comparative population genomics in animals uncovers the determinants of genetic diversity

(2014) J. Romiguier et al.   NATURE

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2015

(2014) Fiona Cunningham et al.   NUCLEIC ACIDS RESEARCH

A cDNA Resource for Gene Expression Studies of a Hemichordate,Ptychodera flava

(2014) Kuni Tagawa et al.   ZOOLOGICAL SCIENCE

An Integrated Holo-Enhancer Unit Defines Tissue and Gene Specificity of the Fgf8 Regulatory Landscape

(2013) Mirna Marinić et al.   DEVELOPMENTAL CELL

A detailed description of the development of the hemichordate Saccoglossus kowalevskii using SEM, TEM, Histology and 3D-reconstructions

(2013) Sabrina Kaul-Strehlow et al.   Frontiers in Zoology

Identical Genomic Organization of Two Hemichordate Hox Clusters

(2012) Robert Freeman et al.   CURRENT BIOLOGY

Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints

(2012) M. Irimia et al.   GENOME RESEARCH

TGFβ signalling in context

(2012) Joan Massagué   NATURE REVIEWS MOLECULAR CELL BIOLOGY

New Insights on the Sialidase Protein Family Revealed by a Phylogenetic Analysis in Metazoa

(2012) Edoardo Giacopuzzi et al.   PLoS One

Conserved Function of lincRNAs in Vertebrate Embryonic Development despite Rapid Sequence Evolution

(2011) Igor Ulitsky et al.   CELL

Maternal Oct1/2 is required for Nodal and Vg1/Univin expression during dorsal–ventral axis specification in the sea urchin embryo

(2011) Ryan Range et al.   DEVELOPMENTAL BIOLOGY

Acoelomorph flatworms are deuterostomes related to Xenoturbella

(2011) Hervé Philippe et al.   NATURE

Higher-level metazoan relationships: recent progress and remaining questions

(2011) Gregory D. Edgecombe et al.   ORGANISMS DIVERSITY & EVOLUTION

Transphyletic conservation of developmental regulatory state in animal evolution

(2011) J. L. Royo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A stem-deuterostome origin of the vertebrate pharyngeal transcriptional network

(2011) J. A. Gillis et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Ancient Vertebrate Conserved Noncoding Elements Have Been Evolving Rapidly in Teleost Fishes

(2010) A. P. Lee et al.   MOLECULAR BIOLOGY AND EVOLUTION

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

(2009) Nicolas Lartillot et al.   BIOINFORMATICS

The gill slits and pre-oral ciliary organ of Protoglossus (Hemichordata: Enteropneusta) are filter-feeding structures

(2009) PAUL GONZALEZ et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Up-regulation of C/EBP by thyroid hormones: A case demonstrating the vertebrate-like thyroid hormone signaling pathway in amphioxus

(2009) Shaohui Wang et al.   MOLECULAR AND CELLULAR ENDOCRINOLOGY

A transposon-based chromosomal engineering method to survey a large cis-regulatory landscape in mice

(2009) Chikara Kokubu et al.   NATURE GENETICS

Assessing the root of bilaterian animals with scalable phylogenomic methods

(2009) A. Hejnol et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Man is but a worm: Chordate origins

(2008) Federico D. Brown et al.   GENESIS

The amphioxus genome and the evolution of the chordate karyotype

(2008) Nicholas H. Putnam et al.   NATURE

Deciphering deuterostome phylogeny: molecular, morphological and palaeontological perspectives

(2008) B. J Swalla et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES