Transcriptomic analysis of Citrus clementina mandarin fruits maturation reveals a MADS-box transcription factor that might be involved in the regulation of earliness

Ethylene receptors and related proteins in climacteric and non-climacteric fruits

(2018) Yi Chen et al.   PLANT SCIENCE

Comparative transcriptome analyses of a late-maturing mandarin mutant and its original cultivar reveals gene expression profiling associated with citrus fruit maturation

(2017) Lu Wang et al.   PeerJ

The banana fruit Dof transcription factor MaDof23 acts as a repressor and interacts with MaERF9 in regulating ripening-related genes

(2016) Bi-hong Feng et al.   JOURNAL OF EXPERIMENTAL BOTANY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening

(2016) Xue-ren Yin et al.   PLANT JOURNAL

The Tomato Hoffman’s Anthocyaninless Gene Encodes a bHLH Transcription Factor Involved in Anthocyanin Biosynthesis That Is Developmentally Regulated and Induced by Low Temperatures

(2016) Zhengkun Qiu et al.   PLoS One

The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4

(2016) Shao-jia Li et al.   Scientific Reports

Genome-Wide Identification of the Transcription Factors Involved in Citrus Fruit Ripening from the Transcriptomes of a Late-Ripening Sweet Orange Mutant and Its Wild Type

(2016) Juxun Wu et al.   PLoS One

Role of the Tomato Non-Ripening Mutation in Regulating Fruit Quality Elucidated Using iTRAQ Protein Profile Analysis

(2016) Xin-Yu Yuan et al.   PLoS One

Involvement of a citrus meiotic recombination TTC-repeat motif in the formation of gross deletions generated by ionizing radiation and MULE activation

(2015) Javier Terol et al.   BMC GENOMICS

Transcriptome and metabolome analyses of sugar and organic acid metabolism in Ponkan (Citrus reticulata) fruit during fruit maturation

(2015) Qiong Lin et al.   GENE

Role for the banana AGAMOUS-like geneMaMADS7in regulation of fruit ripening and quality

(2015) Juhua Liu et al.   PHYSIOLOGIA PLANTARUM

An RNA-Seq-based reference transcriptome for Citrus

(2015) Javier Terol et al.   PLANT BIOTECHNOLOGY JOURNAL

The Zinc Finger Transcription FactorSlZFP2Negatively Regulates Abscisic Acid Biosynthesis and Fruit Ripening in Tomato

(2015) Lin Weng et al.   PLANT PHYSIOLOGY

Comparative Transcriptome Analyses between a Spontaneous Late-Ripening Sweet Orange Mutant and Its Wild Type Suggest the Functions of ABA, Sucrose and JA during Citrus Fruit Ripening

(2015) Ya-Jian Zhang et al.   PLoS One

Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series

(2014) M. J. Nueda et al.   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

An integrative analysis of the transcriptome and proteome of the pulp of a spontaneous late-ripening sweet orange mutant and its wild type improves our understanding of fruit ripening in citrus

(2014) Juxun Wu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcriptional control of fleshy fruit development and ripening

(2014) Rumyana Karlova et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparative de novo transcriptome analysis and metabolic pathway studies of Citrus paradisi flavedo from naive stage to ripened stage

(2014) Maulik Patel et al.   MOLECULAR BIOLOGY REPORTS

The service-based bioeconomy

(2014)   NATURE BIOTECHNOLOGY

Transcriptional Regulation of Fruit Ripening by Tomato FRUITFULL Homologs and Associated MADS Box Proteins

(2014) M. Fujisawa et al.   PLANT CELL

microRNA156-targeted SPL/SBP box transcription factors regulate tomato ovary and fruit development

(2014) Geraldo Felipe Ferreira e Silva et al.   PLANT JOURNAL

Differential transcriptional regulation of l-ascorbic acid content in peel and pulp of citrus fruits during development and maturation

(2014) Enriqueta Alós et al.   PLANTA

A Non-Climacteric Fruit Gene CaMADS-RIN Regulates Fruit Ripening and Ethylene Biosynthesis in Climacteric Fruit

(2014) Tingting Dong et al.   PLoS One

PlantTFcat: an online plant transcription factor and transcriptional regulator categorization and analysis tool

(2013) Xinbin Dai et al.   BMC BIOINFORMATICS

A SHATTERPROOF-like gene controls ripening in non-climacteric strawberries, and auxin and abscisic acid antagonistically affect its expression

(2013) Margherita Daminato et al.   JOURNAL OF EXPERIMENTAL BOTANY

Altered sensitivity to ethylene in ‘Tardivo’, a late-ripening mutant of Clementine mandarin

(2013) Enriqueta Alós et al.   PHYSIOLOGIA PLANTARUM

A Tomato MADS-Box Transcription Factor, SlMADS1, Acts as a Negative Regulator of Fruit Ripening

(2013) T. Dong et al.   PLANT PHYSIOLOGY

Transcriptome changes during fruit development and ripening of sweet orange (Citrus sinensis)

(2012) Keqin Yu et al.   BMC GENOMICS

Degreening and postharvest storage influences ‘Star Ruby’ grapefruit (Citrus paradisi Macf.) bioactive compounds

(2012) Priyanka Chaudhary et al.   FOOD CHEMISTRY

Branch girdling at fruit green mature stage affects fruit ascorbic acid contents and expression of genes involved inl-galactose pathway in citrus

(2012) Xiao-Yan Yang et al.   NEW ZEALAND JOURNAL OF CROP AND HORTICULTURAL SCIENCE

The Tomato FRUITFULL Homologs TDR4/FUL1 and MBP7/FUL2 Regulate Ethylene-Independent Aspects of Fruit Ripening

(2012) M. Bemer et al.   PLANT CELL

The fading distinctions between classical patterns of ripening in climacteric and non-climacteric fruit and the ubiquity of ethylene—An overview

(2011) Vijay Paul et al.   JOURNAL OF FOOD SCIENCE AND TECHNOLOGY-MYSORE

Transcriptome and Metabolite Profiling Show That APETALA2a Is a Major Regulator of Tomato Fruit Ripening

(2011) R. Karlova et al.   PLANT CELL

Unraveling the regulatory network of the MADS box transcription factor RIN in fruit ripening

(2011) Guozheng Qin et al.   PLANT JOURNAL

Transcriptome analysis of fruit development of a citrus late-ripening mutant by microarray

(2011) Jiwu Zeng et al.   SCIENTIA HORTICULTURAE

Chlorophyll breakdown in higher plants

(2010) Stefan Hörtensteiner et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

A SEPALLATA gene is involved in the development and ripening of strawberry (Fragaria×ananassa Duch.) fruit, a non-climacteric tissue*

(2010) Graham B. Seymour et al.   JOURNAL OF EXPERIMENTAL BOTANY

A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening

(2010) Mi-Young Chung et al.   PLANT JOURNAL

Isolation of a citrus ethylene-responsive element binding factor gene and its expression in response to abiotic stress, girdling and shading

(2010) Xiao-Yan Yang et al.   SCIENTIA HORTICULTURAE

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Physiological and Molecular Analysis of the Maturation Process in Fruits of Clementine Mandarin and One of Its Late-Ripening Mutants

(2009) Gaetano Distefano et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Transcriptome analysis of a spontaneous mutant in sweet orange [Citrus sinensis (L.) Osbeck] during fruit development

(2009) Qing Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Fleshy Fruit Expansion and Ripening Are Regulated by the Tomato SHATTERPROOF Gene TAGL1

(2009) J. Vrebalov et al.   PLANT CELL

Characterization and expression analysis of AGAMOUS-like, SEEDSTICK-like, and SEPALLATA-like MADS-box genes in peach (Prunus persica) fruit

(2009) Eleni Tani et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Characterization of hemizygous deletions in Citrus using array-Comparative Genomic Hybridization and microsynteny comparisons with the poplar genome

(2008) Gabino Ríos et al.   BMC GENOMICS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

An Evaluation of the Basis and Consequences of a Stay-Green Mutation in the navel negra Citrus Mutant Using Transcriptomic and Proteomic Profiling and Metabolite Analysis

(2008) E. Alos et al.   PLANT PHYSIOLOGY

Differential regulation of tomato ethylene responsive factor LeERF3b, a putative repressor, and the activator Pti4 in ripening mutants and in response to environmental stresses

(2007) Guoping Chen et al.   JOURNAL OF PLANT PHYSIOLOGY