An integrative analysis of the transcriptome and proteome of the pulp of a spontaneous late-ripening sweet orange mutant and its wild type improves our understanding of fruit ripening in citrus

Type 2C protein phosphatase ABI1 is a negative regulator of strawberry fruit ripening

(2013) Hai-feng Jia et al.   JOURNAL OF EXPERIMENTAL BOTANY

Sucrose functions as a signal involved in the regulation of strawberry fruit development and ripening

(2013) Haifeng Jia et al.   NEW PHYTOLOGIST

The role of abscisic acid in regulating cucumber fruit development and ripening and its transcriptional regulation

(2013) Yanping Wang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

ABA may promote or delay peach fruit ripening through modulation of ripening- and hormone-related gene expression depending on the developmental stage

(2013) Alvaro Soto et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Transcriptome changes during fruit development and ripening of sweet orange (Citrus sinensis)

(2012) Keqin Yu et al.   BMC GENOMICS

Non-climacteric ripening in strawberry fruit is linked to ABA, FaNCED2 and FaCYP707A1

(2012) Kai Ji et al.   FUNCTIONAL PLANT BIOLOGY

Comparative transcriptomics and proteomics analysis of citrus fruit, to improve understanding of the effect of low temperature on maintaining fruit quality during lengthy post-harvest storage

(2012) Ze Yun et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Citrus ABA signalosome: identification and transcriptional regulation during sweet orange fruit ripening and leaf dehydration

(2012) Paco Romero et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparative Transcript Profiling of a Male Sterile Cybrid Pummelo and Its Fertile Type Revealed Altered Gene Expression Related to Flower Development

(2012) Bei-Bei Zheng et al.   PLoS One

Methods in Quantitative Proteomics: Setting iTRAQ on the Right Track

(2011) Josselin Noirel et al.   Current Proteomics

Label-free shotgun proteomics and metabolite analysis reveal a significant metabolic shift during citrus fruit development

(2011) Ehud Katz et al.   JOURNAL OF EXPERIMENTAL BOTANY

The fading distinctions between classical patterns of ripening in climacteric and non-climacteric fruit and the ubiquity of ethylene—An overview

(2011) Vijay Paul et al.   JOURNAL OF FOOD SCIENCE AND TECHNOLOGY-MYSORE

Systems Biology of Tomato Fruit Development: Combined Transcript, Protein, and Metabolite Analysis of Tomato Transcription Factor ( nor, rin ) and Ethylene Receptor ( Nr ) Mutants Reveals Novel Regulatory Interactions

(2011) Sonia Osorio et al.   PLANT PHYSIOLOGY

Suppression of 9-cis-Epoxycarotenoid Dioxygenase, Which Encodes a Key Enzyme in Abscisic Acid Biosynthesis, Alters Fruit Texture in Transgenic Tomato

(2011) L. Sun et al.   PLANT PHYSIOLOGY

Abscisic Acid Plays an Important Role in the Regulation of Strawberry Fruit Ripening

(2011) Hai-Feng Jia et al.   PLANT PHYSIOLOGY

Galacturonosyltransferase (GAUT)1 and GAUT7 are the core of a plant cell wall pectin biosynthetic homogalacturonan:galacturonosyltransferase complex

(2011) M. A. Atmodjo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative analysis of major plant hormones in crude plant extracts by high-performance liquid chromatography–mass spectrometry

(2010) Xiangqing Pan et al.   Nature Protocols

Simultaneous analysis of relative protein expression levels across multiple samples using iTRAQ isobaric tags with 2D nano LC–MS/MS

(2010) Richard D Unwin et al.   Nature Protocols

iTRAQ Protein Profile Analysis of Arabidopsis Roots Reveals New Aspects Critical for Iron Homeostasis

(2010) P. Lan et al.   PLANT PHYSIOLOGY

Comparative transcripts profiling reveals new insight into molecular processes regulating lycopene accumulation in a sweet orange (Citrus sinensis) red-flesh mutant

(2009) Qiang Xu et al.   BMC GENOMICS

Abscisic acid stimulated ripening and gene expression in berry skins of the Cabernet Sauvignon grape

(2009) Kazuya Koyama et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Transcriptome analysis of a spontaneous mutant in sweet orange [Citrus sinensis (L.) Osbeck] during fruit development

(2009) Qing Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Co-ordination of early and late ripening events in apples is regulated through differential sensitivities to ethylene

(2009) Jason W. Johnston et al.   JOURNAL OF EXPERIMENTAL BOTANY

The role of ABA in triggering ethylene biosynthesis and ripening of tomato fruit

(2009) M. Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Molecular mechanism of distinct ripening profiles in ‘Fuji’ apple fruit and its early maturing sports

(2009) Aide Wang et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Comparative proteomics of a lycopene-accumulating mutant reveals the important role of oxidative stress on carotenogenesis in sweet orange (Citrus sinensis [L.] osbeck)

(2009) Zhiyong Pan et al.   PROTEOMICS

Functional Differentiation ofBrassica napusGuard Cells and Mesophyll Cells Revealed by Comparative Proteomics

(2008) Mengmeng Zhu et al.   MOLECULAR & CELLULAR PROTEOMICS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS