Multiple radiations of spiny mice (Rodentia: Acomys) in dry open habitats of Afro-Arabia: evidence from a multi-locus phylogeny

Conceptual and statistical problems with the DEC+J model of founder-event speciation and its comparison with DEC via model selection

(2018) Richard H. Ree et al.   JOURNAL OF BIOGEOGRAPHY

Phylogeography of a widespread sub-Saharan murid rodent Aethomys chrysophilus: the role of geographic barriers and paleoclimate in the Zambezian bioregion

(2018) Vladimír Mazoch et al.   MAMMALIA

Spiny mice of the Zambezian bioregion – phylogeny, biogeography and ecological differentiation within the Acomys spinosissimus complex

(2018) Jan Petružela et al.   MAMMALIAN BIOLOGY

Reticulate Pleistocene evolution of Ethiopian rodent genus along remarkable altitudinal gradient

(2018) Josef Bryja et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The role of climatic cycles and trans-Saharan migration corridors in species diversification: Biogeography of Psammophis schokari group in North Africa

(2018) Duarte Vasconcelos Gonçalves et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Fossils know it best: using a new set of fossil calibrations to improve the temporal phylogenetic framework of murid rodents (Rodentia: Muridae)

(2018) Tatiana Aghová et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Differentiation underground: Range-wide multilocus genetic structure of the silvery mole-rat does not support current taxonomy based on mitochondrial sequences

(2018) Josef Bryja et al.   MAMMALIAN BIOLOGY

Multilocus phylogeny of East African gerbils (Rodentia, Gerbilliscus ) illuminates the history of the Somali-Masai savanna

(2017) Tatiana Aghová et al.   JOURNAL OF BIOGEOGRAPHY

Multispecies coalescent delimits structure, not species

(2017) Jeet Sukumaran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Species delimitation in frogs from South American temperate forests: The case of Eupsophus, a taxonomically complex genus with high phenotypic variation

(2017) Claudio Correa et al.   PLoS One

Muroid rodent phylogenetics: 900-species tree reveals increasing diversification rates

(2017) Scott J. Steppan et al.   PLoS One

Mammals of the Babille Elephant Sanctuary (Eastern Ethiopia)

(2017) L.A. Lavrenchenko et al.   RUSSIAN JOURNAL OF THERIOLOGY

Alloparental behaviour in Sinai spiny mice Acomys dimidiatus: a case of misdirected parental care?

(2016) Vladimíra Tučková et al.   BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY

Multi-locus Analyses Reveal Four Giraffe Species Instead of One

(2016) Julian Fennessy et al.   CURRENT BIOLOGY

Algorithmic improvements to species delimitation and phylogeny estimation under the multispecies coalescent

(2016) Graham Jones   JOURNAL OF MATHEMATICAL BIOLOGY

Evolutionary history and species diversity of African pouched mice (Rodentia: Nesomyidae:Saccostomus)

(2016) Ondřej Mikula et al.   ZOOLOGICA SCRIPTA

Newly discovered cercopithecid, equid and other mammalian fossils from the Chorora Formation, Ethiopia

(2015) GEN SUWA et al.   ANTHROPOLOGICAL SCIENCE

Phylogeography and evolutionary history of the Crocidura olivieri complex (Mammalia, Soricomorpha): from a forest origin to broad ecological expansion across Africa

(2015) François Jacquet et al.   BMC EVOLUTIONARY BIOLOGY

Terrestrial fishes: rivers are barriers to gene flow in annual fishes from the African savanna

(2015) Veronika Bartáková et al.   JOURNAL OF BIOGEOGRAPHY

Multilocus phylogeography of a widespread savanna-woodland-adapted rodent reveals the influence of Pleistocene geomorphology and climate change in Africa's Zambezi region

(2015) Molly M. McDonough et al.   MOLECULAR ECOLOGY

DISSECT: an assignment-free Bayesian discovery method for species delimitation under the multispecies coalescent

(2014) Graham Jones et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Pan-African phylogeny of Mus (subgenus Nannomys) reveals one of the most successful mammal radiations in Africa

(2014) Josef Bryja et al.   BMC EVOLUTIONARY BIOLOGY

Genetic diversity of the Ethiopian Grevy’s zebra (Equus grevyi)populations that includes a unique population of the Alledeghi Plain

(2014) Fanuel Kebede et al.   Mitochondrial DNA

Sympatric incipient speciation of spiny mice Acomys at "Evolution Canyon," Israel

(2014) Y. Hadid et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Model Selection in Historical Biogeography Reveals that Founder-Event Speciation Is a Crucial Process in Island Clades

(2014) Nicholas J. Matzke   SYSTEMATIC BIOLOGY

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

A general species delimitation method with applications to phylogenetic placements

(2013) Jiajie Zhang et al.   BIOINFORMATICS

A mitochondrial phylogeographic scenario for the most widespread African rodent,Mastomys natalensis

(2013) Paolo Colangelo et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Unravelling biodiversity, evolution and threats to conservation in the Sahara-Sahel

(2013) José C. Brito et al.   BIOLOGICAL REVIEWS

MTML-msBayes: Approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity

(2013) Wen Huang et al.   BMC BIOINFORMATICS

How to fail at species delimitation

(2013) Bryan C. Carstens et al.   MOLECULAR ECOLOGY

Mitochondrial and Nuclear Genes-Based Phylogeography of Arvicanthis niloticus (Murinae) and Sub-Saharan Open Habitats Pleistocene History

(2013) Gauthier Dobigny et al.   PLoS One

Hominin evolution in settings of strong environmental variability

(2013) Richard Potts   QUATERNARY SCIENCE REVIEWS

On the genetic diversity of spiny mice (genusAcomys) and gerbils (genusGerbillus) in the Arabian Peninsula

(2013) Timothy C. Bray et al.   ZOOLOGY IN THE MIDDLE EAST

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

The partitioning of Africa: statistically defined biogeographical regions in sub-Saharan Africa

(2012) H. Peter Linder et al.   JOURNAL OF BIOGEOGRAPHY

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparative phylogeography of African savannah ungulates1

(2012) E. D. LORENZEN et al.   MOLECULAR ECOLOGY

Skin shedding and tissue regeneration in African spiny mice (Acomys)

(2012) Ashley W. Seifert et al.   NATURE

A regional climate model study of the impact of tectonic and orbital forcing on African precipitation and vegetation

(2012) Kerstin Prömmel et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY

An Update of Wallace's Zoogeographic Regions of the World

(2012) B. G. Holt et al.   SCIENCE

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Social and life history correlates of litter size in captive colonies of precocial spiny mice (Acomys)

(2011) Daniel Frynta et al.   ACTA THERIOLOGICA

New data on the evolution of the Cretan spiny mouse, Acomys minous (Rodentia: Murinae), shed light on the phylogenetic relationships in the cahirinus group

(2011) EVA B. GIAGIA-ATHANASOPOULOU et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Three new karyotypes extend a Robertsonian fan in Ethiopian spiny mice of the genus Acomys I. Geoffroy, 1838 (Mammalia, Rodentia)

(2011) Nina Bulatova et al.   Comparative Cytogenetics

ABGD, Automatic Barcode Gap Discovery for primary species delimitation

(2011) N. PUILLANDRE et al.   MOLECULAR ECOLOGY

DensiTree: making sense of sets of phylogenetic trees

(2010) R. R. Bouckaert   BIOINFORMATICS

Plio-Pleistocene history of West African Sudanian savanna and the phylogeography of the Praomys daltoni complex (Rodentia): the environment/geography/genetic interplay

(2010) J. BRYJA et al.   MOLECULAR ECOLOGY

Human evolution in a variable environment: the amplifier lakes of Eastern Africa

(2010) Martin H. Trauth et al.   QUATERNARY SCIENCE REVIEWS

Phylogeography of spiny mice (genus Acomys, Rodentia: Muridae) from the south-western margin of the Sahara with taxonomic implications

(2009) VIOLAINE NICOLAS et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Phylogeography of the Guinea multimammate mouse (Mastomys erythroleucus): a case study for Sahelian species in West Africa

(2009) Carine Brouat et al.   JOURNAL OF BIOGEOGRAPHY

The distribution of forest passerine birds and Quaternary climatic change in tropical Africa

(2009) A. W. Diamond et al.   JOURNAL OF ZOOLOGY

Molecular phylogenetics reveal multiple tertiary vicariance origins of the African rain forest trees

(2008) Thomas LP Couvreur et al.   BMC BIOLOGY

Climate-driven diversification in two widespread Galerida larks

(2008) Alban Guillaumet et al.   BMC EVOLUTIONARY BIOLOGY

The conditioned reconstructed process

(2008) Tanja Gernhard   JOURNAL OF THEORETICAL BIOLOGY

Does Choice in Model Selection Affect Maximum Likelihood Analysis?

(2008) Jennifer Ripplinger et al.   SYSTEMATIC BIOLOGY

Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and Cladogenesis

(2008) Richard H. Ree et al.   SYSTEMATIC BIOLOGY