RhoTermPredict: an algorithm for predicting Rho-dependent transcription terminators based on Escherichia coli, Bacillus subtilis and Salmonella enterica databases
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Title
RhoTermPredict: an algorithm for predicting Rho-dependent transcription terminators based on Escherichia coli, Bacillus subtilis and Salmonella enterica databases
Authors
Keywords
RhoTermPredict, Rho-dependent terminators, RUT site, Motif, Transcription termination, Rho
Journal
BMC BIOINFORMATICS
Volume 20, Issue 1, Pages -
Publisher
Springer Nature
Online
2019-03-07
DOI
10.1186/s12859-019-2704-x
References
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- A multivariate prediction model for Rho-dependent termination of transcription
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- (2017) Laure Botella et al. Nature Communications
- Termination factor Rho: From the control of pervasive transcription to cell fate determination in Bacillus subtilis
- (2017) Vladimir Bidnenko et al. PLoS Genetics
- Mechanisms of Bacterial Transcription Termination: All Good Things Must End
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- Transcription termination factor Rho: a hub linking diverse physiological processes in bacteria
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- Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions
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- Direct observation of the translocation mechanism of transcription termination factor Rho
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- Interactions between RNA polymerase and the "core recognition element" counteract pausing
- (2014) I. O. Vvedenskaya et al. SCIENCE
- Terminator still moving forward: expanding roles for Rho factor
- (2013) Marc Boudvillain et al. CURRENT OPINION IN MICROBIOLOGY
- Rho and NusG suppress pervasive antisense transcription in Escherichia coli
- (2012) J. M. Peters et al. GENES & DEVELOPMENT
- Binding and Translocation of Termination Factor Rho Studied at the Single-Molecule Level
- (2012) Daniel J. Koslover et al. JOURNAL OF MOLECULAR BIOLOGY
- Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis
- (2012) P. Nicolas et al. SCIENCE
- Bacterial Transcription Terminators: The RNA 3′-End Chronicles
- (2011) Jason M. Peters et al. JOURNAL OF MOLECULAR BIOLOGY
- RNIE: genome-wide prediction of bacterial intrinsic terminators
- (2011) P. P. Gardner et al. NUCLEIC ACIDS RESEARCH
- ARNold: A web tool for the prediction of Rho-independent transcription terminators
- (2011) Magali Naville et al. RNA Biology
- An allosteric mechanism of Rho-dependent transcription termination
- (2010) Vitaly Epshtein et al. NATURE
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