RNIE: genome-wide prediction of bacterial intrinsic terminators

R2R - software to speed the depiction of aesthetic consensus RNA secondary structures

(2011) Zasha Weinberg et al.   BMC BIOINFORMATICS

Transcription attenuation in bacteria: theme and variations

(2011) M. Naville et al.   Briefings in Functional Genomics

sRNAscanner: A Computational Tool for Intergenic Small RNA Detection in Bacterial Genomes

(2010) Jayavel Sridhar et al.   PLoS One

Local RNA structure alignment with incomplete sequence

(2009) Diana L. Kolbe et al.   BIOINFORMATICS

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants

(2009) G. C. Langridge et al.   GENOME RESEARCH

Occurrence, divergence and evolution of intrinsic terminators across Eubacteria

(2009) Anirban Mitra et al.   GENOMICS

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

(2009) Dongying Wu et al.   NATURE

Improvements to services at the European Nucleotide Archive

(2009) Rasko Leinonen et al.   NUCLEIC ACIDS RESEARCH

The phage abortive infection system, ToxIN, functions as a protein–RNA toxin–antitoxin pair

(2009) Peter C. Fineran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi

(2009) Timothy T. Perkins et al.   PLoS Genetics

Biocomputational prediction of small non-coding RNAs in Streptomyces

(2008) Josef Pánek et al.   BMC GENOMICS

WAR: Webserver for aligning structural RNAs

(2008) E. Torarinsson et al.   NUCLEIC ACIDS RESEARCH

The Vienna RNA Websuite

(2008) A. R. Gruber et al.   NUCLEIC ACIDS RESEARCH

Rfam: updates to the RNA families database

(2008) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH

Genome-wide analysis of the intrinsic terminators of transcription across the genus Mycobacterium

(2008) A. Mitra et al.   TUBERCULOSIS