Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions

Bacteriophage-mediated spread of bacterial virulence genes

(2015) José R Penadés et al.   CURRENT OPINION IN MICROBIOLOGY

Small Regulatory RNA-Induced Growth Rate Heterogeneity of Bacillus subtilis

(2015) Ruben A. T. Mars et al.   PLoS Genetics

Sigma Factor SigB Is Crucial to Mediate Staphylococcus aureus Adaptation during Chronic Infections

(2015) Lorena Tuchscherr et al.   PLoS Pathogens

RNA remodeling by bacterial global regulator CsrA promotes Rho-dependent transcription termination

(2014) N. Figueroa-Bossi et al.   GENES & DEVELOPMENT

The Staphylococcal Cassette Chromosome mec type V from Staphylococcus aureus ST398 is packaged into bacteriophage capsids

(2014) Monika A. Chlebowicz et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Microbiological effects of sublethal levels of antibiotics

(2014) Dan I. Andersson et al.   NATURE REVIEWS MICROBIOLOGY

Pervasive transcription: illuminating the dark matter of bacterial transcriptomes

(2014) Joseph T. Wade et al.   NATURE REVIEWS MICROBIOLOGY

Unusually long-lived pause required for regulation of a Rho-dependent transcription terminator

(2014) K. Hollands et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conservation of Transcription Start Sites within Genes across a Bacterial Genus

(2014) W. Shao et al.   mBio

A Non-Coding RNA Promotes Bacterial Persistence and Decreases Virulence by Regulating a Regulator in Staphylococcus aureus

(2014) Cédric Romilly et al.   PLoS Pathogens

Staphylococcus aureusand Staphylococcal Food-Borne Disease: An Ongoing Challenge in Public Health

(2014) Jhalka Kadariya et al.   Biomed Research International

Comparative proteome analysis reveals conserved and specific adaptation patterns of Staphylococcus aureus after internalization by different types of human non-professional phagocytic host cells

(2014) Kristin Surmann et al.   Frontiers in Microbiology

Terminator still moving forward: expanding roles for Rho factor

(2013) Marc Boudvillain et al.   CURRENT OPINION IN MICROBIOLOGY

The importance of regulatory RNAs in Staphylococcus aureus

(2013) Arnaud Tomasini et al.   INFECTION GENETICS AND EVOLUTION

Activation of the alternative sigma factor SigB of Staphylococcus aureus following internalization by epithelial cells – An in vivo proteomics perspective

(2013) Henrike Pförtner et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Staphylococcus aureus persistence in non-professional phagocytes

(2013) Bettina Löffler et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Global Gene Expression of Methicillin-resistant Staphylococcus aureus USA300 During Human and Mouse Infection

(2013) Shailesh V. Date et al.   JOURNAL OF INFECTIOUS DISEASES

Iron-responsive bacterial small RNAs: variations on a theme

(2013) Amanda G. Oglesby-Sherrouse et al.   Metallomics

Phyletic distribution and conservation of the bacterial transcription termination factor Rho

(2013) F. D'Heygere et al.   MICROBIOLOGY-SGM

SigB Is a Dominant Regulator of Virulence in Staphylococcus aureus Small-Colony Variants

(2013) Gabriel Mitchell et al.   PLoS One

Metabolic Footprint Analysis Uncovers Strain Specific Overflow Metabolism and D-Isoleucine Production of Staphylococcus Aureus COL and HG001

(2013) Kirsten Dörries et al.   PLoS One

Comparative genomics boosts target prediction for bacterial small RNAs

(2013) P. R. Wright et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phagocytosis Escape by a Staphylococcus aureus Protein That Connects Complement and Coagulation Proteins at the Bacterial Surface

(2013) Ya-Ping Ko et al.   PLoS Pathogens

Rho and NusG suppress pervasive antisense transcription in Escherichia coli

(2012) J. M. Peters et al.   GENES & DEVELOPMENT

The WalKR System Controls Major Staphylococcal Virulence Genes and Is Involved in Triggering the Host Inflammatory Response

(2012) Aurélia Delauné et al.   INFECTION AND IMMUNITY

The Extracytoplasmic Function Sigma Factor  S Protects against both Intracellular and Extracytoplasmic Stresses in Staphylococcus aureus

(2012) H. K. Miller et al.   JOURNAL OF BACTERIOLOGY

Rfam 11.0: 10 years of RNA families

(2012) Sarah W. Burge et al.   NUCLEIC ACIDS RESEARCH

Genome-wide identification of genes directly regulated by the pleiotropic transcription factor Spx in Bacillus subtilis

(2012) Tatiana Rochat et al.   NUCLEIC ACIDS RESEARCH

Definition of the σW Regulon of Bacillus subtilis in the Absence of Stress

(2012) Jessica C. Zweers et al.   PLoS One

Rho-dependent transcription termination is essential to prevent excessive genome-wide R-loops in Escherichia coli

(2012) J. Krishna Leela et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis

(2012) P. Nicolas et al.   SCIENCE

Systematic Review: What is the Best Antibiotic Treatment for Staphylococcus aureus Intramammary Infection of Lactating Cows in North America?

(2012) Jean-Philippe Roy et al.   VETERINARY CLINICS OF NORTH AMERICA-FOOD ANIMAL PRACTICE

Bacteriophages ofStaphylococcus aureusefficiently package various bacterial genes and mobile genetic elements including SCCmecwith different frequencies

(2012) Ivana Mašlaňová et al.   Environmental Microbiology Reports

Antisense Transcription Is Pervasive but Rarely Conserved in Enteric Bacteria

(2012) R. Raghavan et al.   mBio

Expression of a Cryptic Secondary Sigma Factor Gene Unveils Natural Competence for DNA Transformation in Staphylococcus aureus

(2012) Kazuya Morikawa et al.   PLoS Pathogens

Recurrent infections and immune evasion strategies of Staphylococcus aureus

(2011) Hwan Keun Kim et al.   CURRENT OPINION IN MICROBIOLOGY

The Sbi Protein Is a Multifunctional Immune Evasion Factor of Staphylococcus aureus

(2011) Emma Jane Smith et al.   INFECTION AND IMMUNITY

The alternative sigma factor B modulates virulence gene expression in a murine Staphylococcus aureus infection model but does not influence kidney gene expression pattern of the host

(2011) Maren Depke et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

The  B-Dependent yabJ-spoVG Operon Is Involved in the Regulation of Extracellular Nuclease, Lipase, and Protease Expression in Staphylococcus aureus

(2011) B. Schulthess et al.   JOURNAL OF BACTERIOLOGY

Inference of the Transcriptional Regulatory Network in Staphylococcus aureus by Integration of Experimental and Genomics-Based Evidence

(2011) D. A. Ravcheev et al.   JOURNAL OF BACTERIOLOGY

Bacterial Transcription Terminators: The RNA 3′-End Chronicles

(2011) Jason M. Peters et al.   JOURNAL OF MOLECULAR BIOLOGY

cis-Antisense RNA, Another Level of Gene Regulation in Bacteria

(2011) J. Georg et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Investigation of the Staphylococcus aureus GraSR Regulon Reveals Novel Links to Virulence, Stress Response and Cell Wall Signal Transduction Pathways

(2011) Mélanie Falord et al.   PLoS One

Genome-wide antisense transcription drives mRNA processing in bacteria

(2011) I. Lasa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Staphylococcus aureus RNome and Its Commitment to Virulence

(2011) Brice Felden et al.   PLoS Pathogens

Bacterial Antisense RNAs: How Many Are There, and What Are They Doing?

(2010) Maureen Kiley Thomason et al.   Annual Review of Genetics

Repair of Global Regulators in Staphylococcus aureus 8325 and Comparative Analysis with Other Clinical Isolates

(2010) S. Herbert et al.   INFECTION AND IMMUNITY

Identification of differentially expressed small non-protein-coding RNAs in Staphylococcus aureus displaying both the normal and the small-colony variant phenotype

(2010) Luay F. Abu-Qatouseh et al.   JOURNAL OF MOLECULAR MEDICINE-JMM

The primary transcriptome of the major human pathogen Helicobacter pylori

(2010) Cynthia M. Sharma et al.   NATURE

Molecular mechanisms of complement evasion: learning from staphylococci and meningococci

(2010) Davide Serruto et al.   NATURE REVIEWS MICROBIOLOGY

Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism

(2010) Chantal Bohn et al.   NUCLEIC ACIDS RESEARCH

Identification of regulatory RNAs in Bacillus subtilis

(2010) Irnov Irnov et al.   NUCLEIC ACIDS RESEARCH

Cartography of Methicillin-Resistant S. aureus Transcripts: Detection, Orientation and Temporal Expression during Growth Phase and Stress Conditions

(2010) Marie Beaume et al.   PLoS One

Time-resolved quantitative proteome profiling of host-pathogen interactions: The response of Staphylococcus aureus RN1HG to internalisation by human airway epithelial cells

(2010) Frank Schmidt et al.   PROTEOMICS

A Staphylococcus aureus Small RNA Is Required for Bacterial Virulence and Regulates the Expression of an Immune-Evasion Molecule

(2010) Svetlana Chabelskaya et al.   PLoS Pathogens

Transcriptional landscape estimation from tiling array data using a model of signal shift and drift

(2009) Pierre Nicolas et al.   BIOINFORMATICS

Comprehensive identification of essential Staphylococcus aureus genes using Transposon-Mediated Differential Hybridisation (TMDH)

(2009) Roy R Chaudhuri et al.   BMC GENOMICS

Single-pass classification of all noncoding sequences in a bacterial genome using phylogenetic profiles

(2009) A. Marchais et al.   GENOME RESEARCH

Staphylococcus aureus host cell invasion and post-invasion events

(2009) Bhanu Sinha et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Role of RsbU in Controlling SigB Activity in Staphylococcus aureus following Alkaline Stress

(2009) J. Pane-Farre et al.   JOURNAL OF BACTERIOLOGY

Reclassification ofStaphylococcus aureusNasal Carriage Types

(2009) Alex van Belkum et al.   JOURNAL OF INFECTIOUS DISEASES

The transcriptionally active regions in the genome ofBacillus subtilis

(2009) Simon Rasmussen et al.   MOLECULAR MICROBIOLOGY

The Listeria transcriptional landscape from saprophytism to virulence

(2009) Alejandro Toledo-Arana et al.   NATURE

Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity

(2009) Rotem Sorek et al.   NATURE REVIEWS GENETICS

A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation

(2009) Thomas Geissmann et al.   NUCLEIC ACIDS RESEARCH

Transcriptome Complexity in a Genome-Reduced Bacterium

(2009) M. Guell et al.   SCIENCE

Increasing Antibiotic Resistance among Methicillin‐ResistantStaphylococcus aureusStrains

(2008) George Sakoulas et al.   CLINICAL INFECTIOUS DISEASES

Pathogenesis of Methicillin‐ResistantStaphylococcus aureusInfection

(2008) Rachel J. Gordon et al.   CLINICAL INFECTIOUS DISEASES

The Virulence Regulator Sae of Staphylococcus aureus: Promoter Activities and Response to Phagocytosis-Related Signals

(2008) T. Geiger et al.   JOURNAL OF BACTERIOLOGY

The Bacillus subtilis iron-sparing response is mediated by a Fur-regulated small RNA and three small, basic proteins

(2008) A. Gaballa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Termination Factor Rho and Its Cofactors NusA and NusG Silence Foreign DNA in E. coli

(2008) C. J. Cardinale et al.   SCIENCE

The alternative sigma factor sigma B of Staphylococcus aureus modulates virulence in experimental central venous catheter-related infections

(2007) Udo Lorenz et al.   MICROBES AND INFECTION