High-throughput sequencing reveals microRNAs and their targets in response to drought stress in wheat (Triticum aestivum L.)

Comparison of sucrose metabolism in wheat seedlings during drought stress and subsequent recovery

(2018) F. Nemati et al.   BIOLOGIA PLANTARUM

Metabolic responses to drought stress in the tissues of drought-tolerant and drought-sensitive wheat genotype seedlings

(2018) Rui Guo et al.   AoB Plants

MiRNA-seq-based profiles of miRNAs in mulberry phloem sap provide insight into the pathogenic mechanisms of mulberry yellow dwarf disease

(2018) Ying-Ping Gai et al.   Scientific Reports

The Multitalented MEDIATOR25

(2017) Kemal Kazan   Frontiers in Plant Science

MicroRNA and Transcription Factor: Key Players in Plant Regulatory Network

(2017) Abdul F. A. Samad et al.   Frontiers in Plant Science

Endogenous microRNA sponges: evidence and controversy

(2016) Daniel W. Thomson et al.   NATURE REVIEWS GENETICS

Identification and comparative analysis of differentially expressed miRNAs in leaves of two wheat (Triticum aestivum L.) genotypes during dehydration stress

(2015) Xingli Ma et al.   BMC PLANT BIOLOGY

miRNA-based drought regulation in wheat

(2015) Guray Akdogan et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

MicroRNA: a new target for improving plant tolerance to abiotic stress

(2015) Baohong Zhang   JOURNAL OF EXPERIMENTAL BOTANY

RNA-mediated epigenetic regulation of gene expression

(2015) Daniel Holoch et al.   NATURE REVIEWS GENETICS

Combined Small RNA and Degradome Sequencing Reveals Novel MiRNAs and Their Targets in the High-Yield Mutant Wheat Strain Yunong 3114

(2015) Feng Chen et al.   PLoS One

Deep sequencing reveals important roles of microRNAs in response to drought and salinity stress in cotton

(2014) Fuliang Xie et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-Wide Characterization of Rice Black Streaked Dwarf Virus-Responsive MicroRNAs in Rice Leaves and Roots by Small RNA and Degradome Sequencing

(2014) Zongtao Sun et al.   PLANT AND CELL PHYSIOLOGY

Differential sRNA Regulation in Leaves and Roots of Sugarcane under Water Depletion

(2014) Flávia Thiebaut et al.   PLoS One

Combined small RNA and degradome sequencing reveals novel miRNAs and their targets in response to low nitrate availability in maize

(2013) Yongping Zhao et al.   ANNALS OF BOTANY

Genome-wide identification of soybean microRNAs and their targets reveals their organ-specificity and responses to phosphate starvation

(2013) Feng Xu et al.   BMC GENOMICS

Emerging roles of microRNAs in the mediation of drought stress response in plants

(2013) Yanfei Ding et al.   JOURNAL OF EXPERIMENTAL BOTANY

Interplay of microRNAs, transcription factors and target genes: linking dynamic expression changes to function

(2013) Petr V. Nazarov et al.   NUCLEIC ACIDS RESEARCH

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing

(2012) Md Shamimuzzaman et al.   BMC GENOMICS

High throughput sequencing reveals novel and abiotic stress-regulated microRNAs in the inflorescences of rice

(2012) Blanca E Barrera-Figueroa et al.   BMC PLANT BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing

(2012) Leighton Folkes et al.   NUCLEIC ACIDS RESEARCH

Deep Annotation of Populus trichocarpa microRNAs from Diverse Tissue Sets

(2012) Joshua R. Puzey et al.   PLoS One

Genome-Wide Identification of miRNAs Responsive to Drought in Peach (Prunus persica) by High-Throughput Deep Sequencing

(2012) Vahap Eldem et al.   PLoS One

Functions of microRNAs in plant stress responses

(2012) Ramanjulu Sunkar et al.   TRENDS IN PLANT SCIENCE

Posttranscriptional regulation of gene expression—adding another layer of complexity to the DNA damage response

(2012) Jorge Boucas et al.   Frontiers in Genetics

miRDeep-P: a computational tool for analyzing the microRNA transcriptome in plants

(2011) Xiaozeng Yang et al.   BIOINFORMATICS

Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing

(2011) Tianzuo Wang et al.   BMC GENOMICS

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Massive Analysis of Rice Small RNAs: Mechanistic Implications of Regulated MicroRNAs and Variants for Differential Target RNA Cleavage

(2011) D.-H. Jeong et al.   PLANT CELL

Expression profiles of precursor and mature microRNAs under dehydration and high salinity shock in Populus euphratica

(2011) Yurong Qin et al.   PLANT CELL REPORTS

Genome-wide profiling of novel and conserved Populus microRNAs involved in pathogen stress response by deep sequencing

(2011) Lei Chen et al.   PLANTA

The Arabidopsis thaliana Med25 mediator subunit integrates environmental cues to control plant development

(2011) N. Elfving et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome sequencing and analysis of the model grass Brachypodium distachyon

(2010) John P. Vogel et al.   NATURE

The widespread regulation of microRNA biogenesis, function and decay

(2010) Jacek Krol et al.   NATURE REVIEWS GENETICS

Small RNAs and Their Roles in Plant Development

(2009) Xuemei Chen   Annual Review of Cell and Developmental Biology

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

(2008) C. Addo-Quaye et al.   BIOINFORMATICS

Endogenous siRNA and miRNA Targets Identified by Sequencing of the Arabidopsis Degradome

(2008) Charles Addo-Quaye et al.   CURRENT BIOLOGY

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL