Early detection of eukaryotic communities from marine biofilm using high-throughput sequencing: an assessment of different sampling devices

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(2016)   Molecular Ecology Resources

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(2016)   Molecular Ecology Resources

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(2016)   Methods in Ecology and Evolution

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(2015)   FEMS MICROBIOLOGY ECOLOGY

Antifouling Coatings Influence both Abundance and Community Structure of Colonizing Biofilms: a Case Study in the Northwestern Mediterranean Sea

(2014) Mercedes Camps et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Membrane biofouling characterization: effects of sample preparation procedures on biofilm structure and the microbial community

(2014) Zheng Xue et al.   BIOFOULING

Integrated metagenomic and metaproteomic analyses of marine biofilm communities

(2014) Dagmar H. Leary et al.   BIOFOULING

Defining the Impact of Non-Native Species

(2014) JONATHAN M. JESCHKE et al.   CONSERVATION BIOLOGY

Rare biosphere exploration using high-throughput sequencing: research progress and perspectives

(2014) Aibin Zhan et al.   CONSERVATION GENETICS

Edge effect: a catalyst of spatial heterogeneity in natural biofilms

(2014) Nandakumar Kanavillil et al.   HYDROBIOLOGIA

Environmental Status Assessment Using DNA Metabarcoding: Towards a Genetics Based Marine Biotic Index (gAMBI)

(2014) Eva Aylagas et al.   PLoS One

Intracellular Diversity of the V4 and V9 Regions of the 18S rRNA in Marine Protists (Radiolarians) Assessed by High-Throughput Sequencing

(2014) Johan Decelle et al.   PLoS One

Assessing Environmental DNA Detection in Controlled Lentic Systems

(2014) Gregory R. Moyer et al.   PLoS One

Harnessing DNA to improve environmental management

(2014) R. P. Kelly et al.   SCIENCE

Hyperbaric biofilms on engineering surfaces formed in the deep sea

(2013) Alexandra Meier et al.   BIOFOULING

The effect of surface colour on the formation of marine micro and macrofouling communities

(2013) Sergey Dobretsov et al.   BIOFOULING

Interactions between microbial biofilms and marine fouling algae: a mini review

(2013) Sophie Mieszkin et al.   BIOFOULING

Mini-review: Inhibition of biofouling by marine microorganisms

(2013) Sergey Dobretsov et al.   BIOFOULING

Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding

(2013) Yinqiu Ji et al.   ECOLOGY LETTERS

Genomics in marine monitoring: New opportunities for assessing marine health status

(2013) Sarah J. Bourlat et al.   MARINE POLLUTION BULLETIN

Redesign of PCR primers for mitochondrial cytochromecoxidase subunit I for marine invertebrates and application in all-taxa biotic surveys

(2013) J. Geller et al.   Molecular Ecology Resources

Molecular genetic tools for environmental monitoring of New Zealand's aquatic habitats, past, present and the future

(2013) SA Wood et al.   NEW ZEALAND JOURNAL OF MARINE AND FRESHWATER RESEARCH

Evaluating Detection Limits of Next-Generation Sequencing for the Surveillance and Monitoring of International Marine Pests

(2013) Xavier Pochon et al.   PLoS One

High sensitivity of 454 pyrosequencing for detection of rare species in aquatic communities

(2013) Aibin Zhan et al.   Methods in Ecology and Evolution

Importance of subaerial biofilms and airborne microflora in the deterioration of stonework: a molecular study

(2012) Andrea Polo et al.   BIOFOULING

Pioneer marine biofilms on artificial surfaces including antifouling coatings immersed in two contrasting French Mediterranean coast sites

(2012) Jean-François Briand et al.   BIOFOULING

Something in the water: biosecurity monitoring of ornamental fish imports using environmental DNA

(2012) Rupert A. Collins et al.   BIOLOGICAL INVASIONS

Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing

(2012) DONALD J. BAIRD et al.   MOLECULAR ECOLOGY

DNA from soil mirrors plant taxonomic and growth form diversity

(2012) N. G. YOCCOZ et al.   MOLECULAR ECOLOGY

Environmental DNA

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Erratum: Corrigendum: Performance comparison of benchtop high-throughput sequencing platforms

(2012) Nicholas J Loman et al.   NATURE BIOTECHNOLOGY

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

Investigating the Potential Use of Environmental DNA (eDNA) for Genetic Monitoring of Marine Mammals

(2012) Andrew D. Foote et al.   PLoS One

Impacts of biological invasions: what's what and the way forward

(2012) Daniel Simberloff et al.   TRENDS IN ECOLOGY & EVOLUTION

Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification

(2011) David Berry et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

From molecules to management: Adopting DNA-based methods for monitoring biological invasions in aquatic environments

(2011) John A. Darling et al.   ENVIRONMENTAL RESEARCH

Development of a real-time PCR assay for the detection of the invasive clam, Corbula amurensis, in environmental samples

(2011) Kirsty F. Smith et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Recommendations on methods for the detection and control of biological pollution in marine coastal waters

(2011) Sergej Olenin et al.   MARINE POLLUTION BULLETIN

Meta-barcoding of ‘dirt’ DNA from soil reflects vertebrate biodiversity

(2011) KENNETH ANDERSEN et al.   MOLECULAR ECOLOGY

Monitoring endangered freshwater biodiversity using environmental DNA

(2011) PHILIP FRANCIS THOMSEN et al.   MOLECULAR ECOLOGY

Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos

(2011) Mehrdad Hajibabaei et al.   PLoS One

Biofilms and Marine Invertebrate Larvae: What Bacteria Produce That Larvae Use to Choose Settlement Sites

(2010) Michael G. Hadfield   Annual Review of Marine Science

DNA barcoding for conservation and management of Amazonian commercial fish

(2010) Alba Ardura et al.   BIOLOGICAL CONSERVATION

Estimating the financial costs of freshwater invasive species in Great Britain: a standardized approach to invasive species costing

(2010) Matthew P. J. Oreska et al.   BIOLOGICAL INVASIONS

Ecological assessment of estuarine sediments by pyrosequencing eukaryotic ribosomal DNA

(2010) Anthony A Chariton et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Bacterial community succession and chemical profiles of subtidal biofilms in relation to larval settlement of the polychaete Hydroides elegans

(2010) Hong Chun Chung et al.   ISME Journal

Second-generation environmental sequencing unmasks marine metazoan biodiversity

(2010) Vera G. Fonseca et al.   Nature Communications

Development of a routine DNA-based testing service for soilborne diseases in Australia

(2009) Kathy Ophel-Keller et al.   AUSTRALASIAN PLANT PATHOLOGY

Marine biofilms on submerged surfaces are a reservoir forEscherichia coliandVibrio cholerae

(2009) Nicholas J. Shikuma et al.   BIOFOULING

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Next-generation DNA sequencing techniques

(2009) Wilhelm J. Ansorge   New Biotechnology

Quantification of Diatom and Dinoflagellate Biomasses in Coastal Marine Seawater Samples by Real-Time PCR

(2008) A. Godhe et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Species detection using environmental DNA from water samples

(2008) G. F. Ficetola et al.   Biology Letters

Assessing the global threat of invasive species to marine biodiversity

(2008) Jennifer L Molnar et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH