Phenotypic and genome-wide association with the local environment of Arabidopsis

Illuminating the role of the Gα heterotrimeric G protein subunit, RGA1, in regulating photoprotection and photoavoidance in rice

(2018) Ángel Ferrero-Serrano et al.   PLANT CELL AND ENVIRONMENT

WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas

(2017) Stephen E. Fick et al.   INTERNATIONAL JOURNAL OF CLIMATOLOGY

Programmable base editing of A•T to G•C in genomic DNA without DNA cleavage

(2017) Nicole M. Gaudelli et al.   NATURE

Araport11: a complete reannotation of theArabidopsis thalianareference genome

(2017) Chia-Yi Cheng et al.   PLANT JOURNAL

African genomes illuminate the early history and transition to selfing inArabidopsis thaliana

(2017) Arun Durvasula et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNA editing with CRISPR-Cas13

(2017) David B. T. Cox et al.   SCIENCE

Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions

(2016) Taiji Kawakatsu et al.   CELL

1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana

(2016) Carlos Alonso-Blanco et al.   CELL

The α-subunit of the rice heterotrimeric G protein, RGA1, regulates drought tolerance during the vegetative phase in the dwarf rice mutantd1

(2016) Ángel Ferrero-Serrano et al.   JOURNAL OF EXPERIMENTAL BOTANY

Molecular and systems approaches towards drought-tolerant canola crops

(2016) Mengmeng Zhu et al.   NEW PHYTOLOGIST

AraPheno: a public database for Arabidopsis thaliana phenotypes

(2016) Ümit Seren et al.   NUCLEIC ACIDS RESEARCH

easyGWAS: A Cloud-Based Platform for Comparing the Results of Genome-Wide Association Studies

(2016) Dominik G. Grimm et al.   PLANT CELL

Common garden experiments in the genomic era: new perspectives and opportunities

(2015) P de Villemereuil et al.   HEREDITY

The heterotrimeric G-proteinβsubunit, AGB1, plays multiple roles in theArabidopsissalinity response

(2015) Yunqing Yu et al.   PLANT CELL AND ENVIRONMENT

Extra-Large G Proteins Expand the Repertoire of Subunits in Arabidopsis Heterotrimeric G Protein Signaling

(2015) David Chakravorty et al.   PLANT PHYSIOLOGY

Photoreceptor Specificity in the Light-Induced and COP1-Mediated Rapid Degradation of the Repressor of Photomorphogenesis SPA2 in Arabidopsis

(2015) Song Chen et al.   PLoS Genetics

DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation

(2015) Manu J Dubin et al.   eLife

Landscape genomics reveal signatures of local adaptation in barley (Hordeum vulgare L.)

(2015) Tiegist D. Abebe et al.   Frontiers in Plant Science

Genome-environment associations in sorghum landraces predict adaptive traits

(2015) J. R. Lasky et al.   Science Advances

Natural Variation in Abiotic Stress Responsive Gene Expression and Local Adaptation to Climate in Arabidopsis thaliana

(2014) Jesse R. Lasky et al.   MOLECULAR BIOLOGY AND EVOLUTION

GWAPP: A Web Application for Genome-Wide Association Mapping in Arabidopsis

(2013) U. Seren et al.   PLANT CELL

The advantages and limitations of trait analysis with GWAS: a review

(2013) Arthur Korte et al.   Plant Methods

Constitutively active UVR8 photoreceptor variant in Arabidopsis

(2013) M. Heijde et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PHYTOCHROME-DEPENDENT LATE-FLOWERING accelerates flowering through physical interactions with phytochrome B and CONSTANS

(2013) M. Endo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Heterotrimeric G protein signalling in the plant kingdom

(2013) D. Urano et al.   Open Biology

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Natural Variation in Abiotic Stress and Climate Change Responses in Arabidopsis: Implications for Twenty-First-Century Agriculture

(2012) Sarah M. Assmann   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Local Adaptation in the Flowering-Time Gene Network of Balsam Poplar, Populus balsamifera L.

(2012) S. R. Keller et al.   MOLECULAR BIOLOGY AND EVOLUTION

Characterizing genomic variation ofArabidopsis thaliana: the roles of geography and climate

(2012) JESSE R. LASKY et al.   MOLECULAR ECOLOGY

An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations

(2012) Vincent Segura et al.   NATURE GENETICS

Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel

(2012) Matthew W Horton et al.   NATURE GENETICS

Rare and common variants: twenty arguments

(2012) Greg Gibson   NATURE REVIEWS GENETICS

The nature of confounding in genome-wide association studies

(2012) Bjarni J. Vilhjálmsson et al.   NATURE REVIEWS GENETICS

Reciprocal transplants demonstrate strong adaptive differentiation of the model organism Arabidopsis thaliana in its native range

(2012) Jon Ågren et al.   NEW PHYTOLOGIST

What does Arabidopsis natural variation teach us (and does not teach us) about adaptation in plants?

(2011) Charlotte Trontin et al.   CURRENT OPINION IN PLANT BIOLOGY

Source verification of mis-identified Arabidopsis thaliana accessions

(2011) Alison E. Anastasio et al.   PLANT JOURNAL

An atypical heterotrimeric G-protein γ-subunit is involved in guard cell K+-channel regulation and morphological development in Arabidopsis thaliana

(2011) David Chakravorty et al.   PLANT JOURNAL

Adaptation to Climate Across the Arabidopsis thaliana Genome

(2011) A. M. Hancock et al.   SCIENCE

Conditions Under Which Genome-Wide Association Studies Will be Positively Misleading

(2010) A. Platt et al.   GENETICS

Using Environmental Correlations to Identify Loci Underlying Local Adaptation

(2010) G. Coop et al.   GENETICS

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants

(2010) Yingrui Li et al.   NATURE GENETICS

New approaches to population stratification in genome-wide association studies

(2010) Alkes L. Price et al.   NATURE REVIEWS GENETICS

The Timing of Flowering

(2010) R. M. Amasino et al.   PLANT PHYSIOLOGY

The Scale of Population Structure in Arabidopsis thaliana

(2010) Alexander Platt et al.   PLoS Genetics

Interaction of COP1 and UVR8 regulates UV-B-induced photomorphogenesis and stress acclimation in Arabidopsis

(2009) Jean-Jacques Favory et al.   EMBO JOURNAL

Finding the missing heritability of complex diseases

(2009) Teri A. Manolio et al.   NATURE

The 1001 Genomes Project for Arabidopsis thaliana

(2009) Detlef Weigel et al.   GENOME BIOLOGY

Shifting Paradigm of Association Studies: Value of Rare Single-Nucleotide Polymorphisms

(2008) Ivan P. Gorlov et al.   AMERICAN JOURNAL OF HUMAN GENETICS

DISCORDANT LONGITUDINAL CLINES IN FLOWERING TIME ANDPHYTOCHROME CINARABIDOPSIS THALIANA

(2008) Karen E. Samis et al.   EVOLUTION