Diet and diet-associated bacteria shape early microbiome development in Yellowtail Kingfish (Seriola lalandi )

The Inner Workings of the Outer Surface: Skin and Gill Microbiota as Indicators of Changing Gut Health in Yellowtail Kingfish

(2018) Thibault P. R. A. Legrand et al.   Frontiers in Microbiology

The Gut Microbiota of Marine Fish

(2018) Sian Egerton et al.   Frontiers in Microbiology

Succession of embryonic and the intestinal bacterial communities of Atlantic salmon (Salmo salar ) reveals stage-specific microbial signatures

(2018) Jep Lokesh et al.   MicrobiologyOpen

Microbiota inoculum composition affects holobiont assembly and host growth in Daphnia

(2018) Martijn Callens et al.   Microbiome

Diet and other environmental factors shape the bacterial communities of fish gut in an eutrophic lake

(2018) E.N. Kashinskaya et al.   JOURNAL OF APPLIED MICROBIOLOGY

Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats

(2017) Meinhard Simon et al.   ISME Journal

Fish intestinal microbiome: diversity and symbiosis unravelled by metagenomics

(2017) A.M. Tarnecki et al.   JOURNAL OF APPLIED MICROBIOLOGY

Composition of Gut Microbiota in the Gibel Carp (Carassius auratus gibelio) Varies with Host Development

(2017) Xinghao Li et al.   MICROBIAL ECOLOGY

Progress in fish gastrointestinal microbiota research

(2017) An R. Wang et al.   Reviews in Aquaculture

The Microbiome of Seriola lalandi of Wild and Aquaculture Origin Reveals Differences in Composition and Potential Function

(2017) Carolina Ramírez et al.   Frontiers in Microbiology

Molecular Taxonomic Profiling of Bacterial Communities in a Gilthead Seabream (Sparus aurata) Hatchery

(2017) Gianmaria Califano et al.   Frontiers in Microbiology

The Effects of Cropping Regimes on Fungal and Bacterial Communities of Wheat and Faba Bean in a Greenhouse Pot Experiment Differ between Plant Species and Compartment

(2017) Sandra Granzow et al.   Frontiers in Microbiology

Microbiome patterns across the gastrointestinal tract of the rabbitfish Siganus fuscescens

(2017) Shaun Nielsen et al.   PeerJ

The malleable gut microbiome of juvenile rainbow trout (Oncorhynchus mykiss): Diet-dependent shifts of bacterial community structures

(2017) Stéphanie Céline Michl et al.   PLoS One

Seawater transfer alters the intestinal microbiota profiles of Atlantic salmon (Salmo salar L.)

(2017) Carola E. Dehler et al.   Scientific Reports

Alternative Protein Sources in the Diet Modulate Microbiota and Functionality in the Distal Intestine of Atlantic Salmon (Salmo salar)

(2016) Karina Gajardo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Environmental filtering decreases with fish development for the assembly of gut microbiota

(2016) Qingyun Yan et al.   ENVIRONMENTAL MICROBIOLOGY

Thymol and Carvacrol Affect Hybrid Tilapia through the Combination of Direct Stimulation and an Intestinal Microbiota-Mediated Effect: Insights from a Germ-Free Zebrafish Model

(2016) Chao Ran et al.   JOURNAL OF NUTRITION

Microbial Diversity and Parasitic Load in Tropical Fish of Different Environmental Conditions

(2016) Philipp Hennersdorf et al.   PLoS One

Ontogenetic Characterization of the Intestinal Microbiota of Channel Catfish through 16S rRNA Gene Sequencing Reveals Insights on Temporal Shifts and the Influence of Environmental Microbes

(2016) Jacob W. Bledsoe et al.   PLoS One

The gut microbiome and degradation enzyme activity of wild freshwater fishes influenced by their trophic levels

(2016) Han Liu et al.   Scientific Reports

Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data: Fig. 1.

(2015) Kathrin P. Aßhauer et al.   BIOINFORMATICS

Selection in the host structures the microbiota associated with developing cod larvae (Gadus morhua)

(2015) Ingrid Bakke et al.   ENVIRONMENTAL MICROBIOLOGY

Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota

(2015) Chris CR Smith et al.   ISME Journal

The composition of the zebrafish intestinal microbial community varies across development

(2015) W Zac Stephens et al.   ISME Journal

Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development

(2015) Adam R Burns et al.   ISME Journal

The development of the gut microbiota in rainbow trout (Oncorhynchus mykiss) is affected by first feeding and diet type

(2014) H.-C. Ingerslev et al.   AQUACULTURE

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Antimicrobial Susceptibility of Vibrio vulnificus and Vibrio parahaemolyticus Recovered from Recreational and Commercial Areas of Chesapeake Bay and Maryland Coastal Bays

(2014) Kristi S. Shaw et al.   PLoS One

Teleost microbiomes: the state of the art in their characterization, manipulation and importance in aquaculture and fisheries

(2014) Martin S. Llewellyn et al.   Frontiers in Microbiology

Temperature and dissolved oxygen influence growth and digestive enzyme activities of yellowtail kingfishSeriola lalandi(Valenciennes, 1833)

(2013) Jenna N Bowyer et al.   AQUACULTURE RESEARCH

Microbiology and immunology of fish larvae

(2013) Olav Vadstein et al.   Reviews in Aquaculture

Fish larval nutrition and feed formulation: knowledge gaps and bottlenecks for advances in larval rearing

(2013) Kristin Hamre et al.   Reviews in Aquaculture

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

(2012) KAREN E. SULLAM et al.   MOLECULAR ECOLOGY

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Evolution of virulence in opportunistic pathogens: generalism, plasticity, and control

(2012) Sam P. Brown et al.   TRENDS IN MICROBIOLOGY

Effect of water temperature on gut transit time, digestive enzyme activity and nutrient digestibility in yellowtail kingfish (Seriola lalandi)

(2010) R.P. Miegel et al.   AQUACULTURE

The current status and future focus of probiotic and prebiotic applications for salmonids

(2010) Daniel L. Merrifield et al.   AQUACULTURE

Analysis of bacterial diversity in the intestine of grass carp (Ctenopharyngodon idellus) based on 16S rDNA gene sequences

(2010) Shaofeng Han et al.   AQUACULTURE RESEARCH

Role of gastrointestinal microbiota in fish

(2010) Sukanta K Nayak   AQUACULTURE RESEARCH

Why bacteria matter in animal development and evolution

(2010) Sebastian Fraune et al.   BIOESSAYS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Host–microbe interactions in the developing zebrafish

(2010) Michelle Kanther et al.   CURRENT OPINION IN IMMUNOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY