The Inner Workings of the Outer Surface: Skin and Gill Microbiota as Indicators of Changing Gut Health in Yellowtail Kingfish

Fish kill caused by aluminium and iron contamination in a natural pond used for fish rearing: a case report 

(2018) A. Slaninova et al.   VETERINARNI MEDICINA

The Microbiome of Seriola lalandi of Wild and Aquaculture Origin Reveals Differences in Composition and Potential Function

(2017) Carolina Ramírez et al.   Frontiers in Microbiology

Response of gut microbiota to salinity change in two euryhaline aquatic animals with reverse salinity preference

(2016) Meiling Zhang et al.   AQUACULTURE

Immune relevant molecules identified in the skin mucus of fish using -omics technologies

(2016) Monica Fengsrud Brinchmann   Molecular BioSystems

Branchial nitrogen cycle symbionts can remove ammonia in fish gills

(2016) Maartje A.H.J. van Kessel et al.   Environmental Microbiology Reports

Mucosal immunoglobulins at respiratory surfaces mark an ancient association that predates the emergence of tetrapods

(2016) Zhen Xu et al.   Nature Communications

Transition from freshwater to seawater reshapes the skin-associated microbiota of Atlantic salmon

(2016) Jep Lokesh et al.   Scientific Reports

pH drop impacts differentially skin and gut microbiota of the Amazonian fish tambaqui (Colossoma macropomum)

(2016) François-Étienne Sylvain et al.   Scientific Reports

Genome Analysis of the Biotechnologically Relevant Acidophilic Iron Oxidising Strain JA12 Indicates Phylogenetic and Metabolic Diversity within the Novel Genus “Ferrovum”

(2016) Sophie R. Ullrich et al.   PLoS One

Topographical Mapping of the Rainbow Trout (Oncorhynchus mykiss) Microbiome Reveals a Diverse Bacterial Community with Antifungal Properties in the Skin

(2015) Liam Lowrey et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Gut Dysbiosis Is Linked to HypertensionNovelty and Significance

(2015) Tao Yang et al.   HYPERTENSION

The biogeography of the atlantic salmon (Salmo salar) gut microbiome

(2015) Martin S Llewellyn et al.   ISME Journal

Proteomic profile of the skin mucus of farmed gilthead seabream (Sparus aurata)

(2015) Juan Jurado et al.   Journal of Proteomics

Characterization of the Skin Microbiota in Italian Stream Frogs (Rana italica) Infected and Uninfected by a Cutaneous Parasitic Disease

(2015) Ermanno Federici et al.   MICROBES AND ENVIRONMENTS

Community Structure of Skin Microbiome of Gulf Killifish, Fundulus grandis, Is Driven by Seasonality and Not Exposure to Oiled Sediments in a Louisiana Salt Marsh

(2015) Andrea M. Larsen et al.   MICROBIAL ECOLOGY

Community assembly of a euryhaline fish microbiome during salinity acclimation

(2015) Victor T. Schmidt et al.   MOLECULAR ECOLOGY

The microbial community structure of the cotton rat nose

(2015) Diego Chaves-Moreno et al.   Environmental Microbiology Reports

Exposure of clownfish larvae to suspended sediment levels found on the Great Barrier Reef: Impacts on gill structure and microbiome

(2015) Sybille Hess et al.   Scientific Reports

The effect of dietary soybean meal and soy protein concentrate on the intestinal mucus layer and development of subacute enteritis in Yellowtail Kingfish (Seriola lalandi) at suboptimal water temperature

(2014) M.S. Bansemer et al.   AQUACULTURE NUTRITION

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

The gill chamber epibiosis of deep-sea shrimpRimicarisexoculata: an in-depth metagenomic investigation and discovery ofZetaproteobacteria

(2014) Cyrielle Jan et al.   ENVIRONMENTAL MICROBIOLOGY

Ecological roles of dominant and rare prokaryotes in acid mine drainage revealed by metagenomics and metatranscriptomics

(2014) Zheng-Shuang Hua et al.   ISME Journal

Inter Individual Variations of the Fish Skin Microbiota: Host Genetics Basis of Mutualism?

(2014) Sébastien Boutin et al.   PLoS One

The pathogenBatrachochytrium dendrobatidisdisturbs the frog skin microbiome during a natural epidemic and experimental infection

(2014) Andrea J. Jani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Teleost microbiomes: the state of the art in their characterization, manipulation and importance in aquaculture and fisheries

(2014) Martin S. Llewellyn et al.   Frontiers in Microbiology

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Probiotic treatment by indigenous bacteria decreases mortality without disturbing the natural microbiota of Salvelinus fontinalis

(2013) Sébastien Boutin et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Toxic effects of chlorpyrifos on lysozyme activities, the contents of complement C3 and IgM, and IgM and complement C3 expressions in common carp (Cyprinus carpio L.)

(2013) Xiaoyu Li et al.   CHEMOSPHERE

Comparing the anterior nare bacterial community of two discrete human populations using Illumina amplicon sequencing

(2013) Amélia Camarinha-Silva et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity of the skin microbiota of fishes: evidence for host species specificity

(2013) Andrea Larsen et al.   FEMS MICROBIOLOGY ECOLOGY

Predominant Bacteria Associated with Red Snapper from the Northern Gulf of Mexico

(2013) Covadonga R. Arias et al.   JOURNAL OF AQUATIC ANIMAL HEALTH

Change in food ingestion induces rapid shifts in the diversity of microbiota associated with cutaneous mucus of Atlantic salmonSalmo salar

(2013) A. Landeira-Dabarca et al.   JOURNAL OF FISH BIOLOGY

Antimicrobial Peptides (AMPs) from Fish Epidermis: Perspectives for Investigative Dermatology

(2013) Sebastian Rakers et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

Network Analysis Highlights Complex Interactions between Pathogen, Host and Commensal Microbiota

(2013) Sébastien Boutin et al.   PLoS One

Teleost skin, an ancient mucosal surface that elicits gut-like immune responses

(2013) Z. Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Role of the gut microbiota in health and chronic gastrointestinal disease: understanding a hidden metabolic organ

(2013) Caitriona M. Guinane et al.   Therapeutic Advances in Gastroenterology

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Diet-Induced Dysbiosis of the Intestinal Microbiota and the Effects on Immunity and Disease

(2012) Kirsty Brown et al.   Nutrients

Taxonomy, Epidemiology, and Clinical Relevance of the Genus Arcobacter

(2011) L. Collado et al.   CLINICAL MICROBIOLOGY REVIEWS

Biodiversity and geochemistry of an extremely acidic, low-temperature subterranean environment sustained by chemolithotrophy

(2011) Sakurako Kimura et al.   ENVIRONMENTAL MICROBIOLOGY

The iron-oxidizing proteobacteria

(2011) S. Hedrich et al.   MICROBIOLOGY-SGM

On the Relationship between Sialomucin and Sulfomucin Expression and Hydrogenotrophic Microbes in the Human Colonic Mucosa

(2011) Jennifer A. Croix et al.   PLoS One

The metabolic activity of gut microbiota in obese children is increased compared with normal-weight children and exhibits more exhaustive substrate utilization

(2011) A N Payne et al.   Nutrition & Diabetes

Identification of the adherent microbiota on the gills and skin of poly-cultured gibel carp (Carassius auratus gibelio) and bluntnose black bream (Megalobrama amblycephala Yih)

(2010) Wenwen Wang et al.   AQUACULTURE RESEARCH

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Immunological Control of Fish Diseases

(2010) Bergljot Magnadottir   MARINE BIOTECHNOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Has the Microbiota Played a Critical Role in the Evolution of the Adaptive Immune System?

(2010) Y. K. Lee et al.   SCIENCE

The 50year evolution of in vitro systems to reveal salt transport functions of teleost fish gills

(2009) William S. Marshall et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Withholding iron as a cellular defence mechanism – friend or foe?

(2008) Helen L. Collins   EUROPEAN JOURNAL OF IMMUNOLOGY

A review on the interactions between gut microbiota and innate immunity of fish: Table 1

(2008) Geovanny D. Gómez et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY