Microbial Diversity and Parasitic Load in Tropical Fish of Different Environmental Conditions

Comparison of the gut microbiomes of 12 bony fish and 3 shark species

(2015) CE Givens et al.   MARINE ECOLOGY PROGRESS SERIES

Comparison of the gut microbiomes of 12 bony fish and 3 shark species

(2015) CE Givens et al.   MARINE ECOLOGY PROGRESS SERIES

Bucephalids (Digenea: Bucephalidae) from marine fishes off the south-western coast of Java, Indonesia, including the description of two new species of Rhipidocotyle and comments on the marine fish digenean fauna of Indonesia

(2015) R. A. Bray et al.   ZOOTAXA

The intestinal microbiome of fish under starvation

(2014) Jun Xia et al.   BMC GENOMICS

Microbiome investigation in the ecological speciation context of lake whitefish (Coregonus clupeaformis) using next-generation sequencing

(2014) M. Sevellec et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Parasites of the grouper fish Epinephelus coioides (Serranidae) as potential environmental indicators in Indonesian coastal ecosystems

(2013) S. Kleinertz et al.   JOURNAL OF HELMINTHOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Two new species of philometrid nematodes (Nematoda: Philometridae) in Epinephelus coioides (Hamilton, 1822) from the South Bali Sea, Indonesia

(2013) KARTIKA DEWI et al.   ZOOTAXA

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Distribution, source identification, and historical trends of organic micropollutants in coastal sediment in Jakarta Bay, Indonesia

(2012) Rinawati et al.   JOURNAL OF HAZARDOUS MATERIALS

An environmental assessment of the parasite fauna of the reef-associated grouper Epinephelus areolatus from Indonesian waters

(2012) S. Kleinertz et al.   JOURNAL OF HELMINTHOLOGY

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

(2012) KAREN E. SULLAM et al.   MOLECULAR ECOLOGY

Diet-Induced Dysbiosis of the Intestinal Microbiota and the Effects on Immunity and Disease

(2012) Kirsty Brown et al.   Nutrients

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Evidence for a core gut microbiota in the zebrafish

(2011) Guus Roeselers et al.   ISME Journal

Anthropogenic organic contaminants in water, sediments and benthic organisms of the mangrove-fringed Segara Anakan Lagoon, Java, Indonesia

(2011) Larissa Dsikowitzky et al.   MARINE POLLUTION BULLETIN

Long-term changes in coral assemblages under natural and anthropogenic stress in Jakarta Bay (1920–2005)

(2010) Sancia E.T. van der Meij et al.   MARINE POLLUTION BULLETIN

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Parasites of cultured and wild brown-marbled grouperEpinephelus fuscoguttatus(Forsskål, 1775) in Lampung Bay, Indonesia

(2009) Sonja Rückert et al.   AQUACULTURE RESEARCH

Bioindicators of changes in water quality on coral reefs: review and recommendations for monitoring programmes

(2009) T. F. Cooper et al.   CORAL REEFS

Decline of the Jakarta Bay molluscan fauna linked to human impact

(2009) Sancia E.T. van der Meij et al.   MARINE POLLUTION BULLETIN

A new approach to visualize ecosystem health by using parasites

(2009) H. W. Palm et al.   PARASITOLOGY RESEARCH

Spatio-temporal variation of macrobenthic communities in the mangrove-fringed Segara Anakan lagoon, Indonesia, affected by anthropogenic activities

(2009) Inga Nordhaus et al.   Regional Environmental Change

Parasite fauna of seabass (Lates calcarifer) under mariculture conditions in Lampung Bay, Indonesia

(2008) S. Rückert et al.   JOURNAL OF APPLIED ICHTHYOLOGY

Transmission of fish parasites into grouper mariculture (Serranidae: Epinephelus coioides (Hamilton, 1822)) in Lampung Bay, Indonesia

(2008) Sonja Rückert et al.   PARASITOLOGY RESEARCH

Metazoan fish parasites of Segara Anakan Lagoon, Indonesia, and their potential use as biological indicators

(2008) Sonja Rueckert et al.   Regional Environmental Change