Efficacy of Integrating a Novel 16-Gene Biomarker Panel and Intelligence Classifiers for Differential Diagnosis of Rheumatoid Arthritis and Osteoarthritis

Ultrasound-guided synovial biopsy improves diagnosis of septic arthritis in acute arthritis without enough analyzable synovial fluid: a retrospective analysis of 176 arthritis from a French rheumatology department

(2018) Guillaume Coiffier et al.   CLINICAL RHEUMATOLOGY

A systematic review on metabolomics-based diagnostic biomarker discovery and validation in pancreatic cancer

(2018) Nguyen Phuoc Long et al.   Metabolomics

Points of Significance: Principal component analysis

(2017) Jake Lever et al.   NATURE METHODS

Synovial tissue research: a state-of-the-art review

(2017) Carl Orr et al.   Nature Reviews Rheumatology

A Comprehensive Gene Expression Meta-analysis Identifies Novel Immune Signatures in Rheumatoid Arthritis Patients

(2017) Sumbul Afroz et al.   Frontiers in Immunology

Triple DMARD treatment in early rheumatoid arthritis modulates synovial T cell activation and plasmablast/plasma cell differentiation pathways

(2017) Alice M. Walsh et al.   PLoS One

Success Rate and Utility of Ultrasound-guided Synovial Biopsies in Clinical Practice

(2016) A. Najm et al.   JOURNAL OF RHEUMATOLOGY

The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

(2016) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Early detection of rheumatoid arthritis in rats and humans with 99mTc-3PRGD2 scintigraphy: imaging synovial neoangiogenesis

(2016) Yu Wu et al.   Oncotarget

Integrative analysis of genome-wide association studies and gene expression analysis identifies pathways associated with rheumatoid arthritis

(2016) Mingming Zhang et al.   Oncotarget

Osteoarthritis

(2016) Johanne Martel-Pelletier et al.   Nature Reviews Disease Primers

Molecular mechanisms of osteoarthritis using gene microarrays

(2015) Shuo Cui et al.   ACTA HISTOCHEMICA

Osteoarthritis

(2015) S Glyn-Jones et al.   LANCET

NetworkAnalyst for statistical, visual and network-based meta-analysis of gene expression data

(2015) Jianguo Xia et al.   Nature Protocols

MetaboAnalyst 3.0—making metabolomics more meaningful

(2015) Jianguo Xia et al.   NUCLEIC ACIDS RESEARCH

Immunopathology of synovitis: from histology to molecular pathways

(2015) Marleen G. van de Sande et al.   RHEUMATOLOGY

Biomarkers of early stage osteoarthritis, rheumatoid arthritis and musculoskeletal health

(2015) Usman Ahmed et al.   Scientific Reports

Building Predictive Models inRUsing thecaretPackage

(2015) Max Kuhn   Journal of Statistical Software

FactoMineR: AnRPackage for Multivariate Analysis

(2015) Sébastien Lê et al.   Journal of Statistical Software

Gene expression analysis in RA: towards personalized medicine

(2014) A N Burska et al.   PHARMACOGENOMICS JOURNAL

Correction: A Comprehensive Molecular Interaction Map for Rheumatoid Arthritis

(2014) Gang Wu et al.   PLoS One

Functional Annotation of Rheumatoid Arthritis and Osteoarthritis Associated Genes by Integrative Genome-Wide Gene Expression Profiling Analysis

(2014) Zhan-Chun Li et al.   PLoS One

Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation

(2014) Dirk Woetzel et al.   ARTHRITIS RESEARCH & THERAPY

An AUC-based permutation variable importance measure for random forests

(2013) Silke Janitza et al.   BMC BIOINFORMATICS

The epidemiology and impact of pain in osteoarthritis

(2013) T. Neogi   OSTEOARTHRITIS AND CARTILAGE

Identification of key regulators for the migration and invasion of rheumatoid synoviocytes through a systems approach

(2013) S. You et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Role of inflammation in the pathogenesis of osteoarthritis: latest findings and interpretations

(2013) Jeremy Sokolove et al.   Therapeutic Advances in Musculoskeletal Disease

A CD4 T cell gene signature for early rheumatoid arthritis implicates interleukin 6-mediated STAT3 signalling, particularly in anti-citrullinated peptide antibody-negative disease

(2012) Arthur G Pratt et al.   ANNALS OF THE RHEUMATIC DISEASES

Batch effect removal methods for microarray gene expression data integration: a survey

(2012) C. Lazar et al.   BRIEFINGS IN BIOINFORMATICS

Comprehensive literature review and statistical considerations for microarray meta-analysis

(2012) George C. Tseng et al.   NUCLEIC ACIDS RESEARCH

pROC: an open-source package for R and S+ to analyze and compare ROC curves

(2011) Xavier Robin et al.   BMC BIOINFORMATICS

Abnormal networks of immune response-related molecules in bone marrow cells from patients with rheumatoid arthritis as revealed by DNA microarray analysis

(2011) Hooi-Ming Lee et al.   ARTHRITIS RESEARCH & THERAPY

Protein Microarrays for Personalized Medicine

(2010) X. Yu et al.   CLINICAL CHEMISTRY

Rheumatoid arthritis

(2010) David L Scott et al.   LANCET

ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization

(2009) Enrico Glaab et al.   BMC BIOINFORMATICS

Early inflammatory arthritis versus rheumatoid arthritis

(2009) Axel Finckh   CURRENT OPINION IN RHEUMATOLOGY

Laboratory Tests to Assess Patients with Rheumatoid Arthritis: Advantages and Limitations

(2009) Theodore Pincus et al.   RHEUMATIC DISEASE CLINICS OF NORTH AMERICA

Merging two gene-expression studies via cross-platform normalization

(2008) Andrey A. Shabalin et al.   BIOINFORMATICS

lumi: a pipeline for processing Illumina microarray

(2008) P. Du et al.   BIOINFORMATICS

Conditional Variable Importance for Random Forests

(2008) Carolin Strobl et al.   BMC BIOINFORMATICS