The Phylogenomic Diversity of Herbivore-Associated Fibrobacter spp. Is Correlated to Lignocellulose-Degrading Potential
出版年份 2018 全文链接
标题
The Phylogenomic Diversity of Herbivore-Associated Fibrobacter spp. Is Correlated to Lignocellulose-Degrading Potential
作者
关键词
-
出版物
mSphere
Volume 3, Issue 6, Pages -
出版商
American Society for Microbiology
发表日期
2018-12-11
DOI
10.1128/msphere.00593-18
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- How Much Do rRNA Gene Surveys Underestimate Extant Bacterial Diversity?
- (2018) Luis M. Rodriguez-R et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- A global analysis of gene expression in Fibrobacter succinogenes S85 grown on cellulose and soluble sugars at different growth rates
- (2018) Anthony P. Neumann et al. Biotechnology for Biofuels
- Sporulation capability and amylosome conservation among diverse human colonic and rumen isolates of the keystone starch-degrader Ruminococcus bromii
- (2017) Indrani Mukhopadhya et al. ENVIRONMENTAL MICROBIOLOGY
- Fibrobacter communities in the gastrointestinal tracts of diverse hindgut-fermenting herbivores are distinct from those of the rumen
- (2017) Anthony P. Neumann et al. ENVIRONMENTAL MICROBIOLOGY
- Lignocellulose-Degrading Microbial Communities in Landfill Sites Represent a Repository of Unexplored Biomass-Degrading Diversity
- (2017) Emma Ransom-Jones et al. mSphere
- Complexity of the Ruminococcus flavefaciens FD-1 cellulosome reflects an expansion of family-related protein-protein interactions
- (2017) Vered Israeli-Ruimy et al. Scientific Reports
- BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences
- (2016) Minoru Kanehisa et al. JOURNAL OF MOLECULAR BIOLOGY
- Complexity of theRuminococcus flavefacienscellulosome reflects an expansion in glycan recognition
- (2016) Immacolata Venditto et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres
- (2016) Nurdyana Abdul Rahman et al. Frontiers in Microbiology
- Engineering of plant cell walls for enhanced biofuel production
- (2015) Dominique Loqué et al. CURRENT OPINION IN PLANT BIOLOGY
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- Microbial species delineation using whole genome sequences
- (2015) Neha J. Varghese et al. NUCLEIC ACIDS RESEARCH
- Polysaccharide utilization locus and CAZYme genome repertoires reveal diverse ecological adaptation of Prevotella species
- (2015) Tomaž Accetto et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range
- (2015) Gemma Henderson et al. Scientific Reports
- Influence of Substrates on the Surface Characteristics and Membrane Proteome of Fibrobacter succinogenes S85
- (2015) Mahendra P. Raut et al. PLoS One
- Evaluating Models of Cellulose Degradation by Fibrobacter succinogenes S85
- (2015) Meagan C. Burnet et al. PLoS One
- Cellulolytic Streptomyces Strains Associated with Herbivorous Insects Share a Phylogenetically Linked Capacity To Degrade Lignocellulose
- (2014) Adam J. Book et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Unique aspects of fiber degradation by the ruminal ethanologen Ruminococcus albus 7 revealed by physiological and transcriptomic analysis
- (2014) Melissa R Christopherson et al. BMC GENOMICS
- Distribution and diversity of members of the bacterial phylum Fibrobacteres in environments where cellulose degradation occurs
- (2014) Emma Ransom-Jones et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes
- (2013) Anthony Levasseur et al. Biotechnology for Biofuels
- Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
- (2013) Chen-Shan Chin et al. NATURE METHODS
- The carbohydrate-active enzymes database (CAZy) in 2013
- (2013) Vincent Lombard et al. NUCLEIC ACIDS RESEARCH
- A phylogenetic analysis of the phylum Fibrobacteres
- (2013) Kelsea A. Jewell et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- dbCAN: a web resource for automated carbohydrate-active enzyme annotation
- (2012) Yanbin Yin et al. NUCLEIC ACIDS RESEARCH
- Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks
- (2012) Daniel H. Huson et al. SYSTEMATIC BIOLOGY
- Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
- (2011) F. Sievers et al. Molecular Systems Biology
- The Complete Genome Sequence of Fibrobacter succinogenes S85 Reveals a Cellulolytic and Metabolic Specialist
- (2011) Garret Suen et al. PLoS One
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- Influence of the Composition of the Cellulolytic Flora on the Development of Hydrogenotrophic Microorganisms, Hydrogen Utilization, and Methane Production in the Rumens of Gnotobiotically Reared Lambs
- (2010) F. Chaucheyras-Durand et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Functional Annotation of Fibrobacter succinogenes S85 Carbohydrate Active Enzymes
- (2010) Phillip Brumm et al. APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY
- Sequencing of Multiple Clostridial Genomes Related to Biomass Conversion and Biofuel Production
- (2010) C. L. Hemme et al. JOURNAL OF BACTERIOLOGY
- Evidence for a novel mechanism of microbial cellulose degradation
- (2009) David B. Wilson CELLULOSE
- Fibrolytic capabilities of ruminal bacteriumFibrobacter succinogenesin relation to its phylogenetic grouping
- (2009) Takumi Shinkai et al. FEMS MICROBIOLOGY LETTERS
- Cel9D, an Atypical 1,4- -D-Glucan Glucohydrolase from Fibrobacter succinogenes: Characteristics, Catalytic Residues, and Synergistic Interactions with Other Cellulases
- (2008) M. Qi et al. JOURNAL OF BACTERIOLOGY
- Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis
- (2008) Harry J. Flint et al. NATURE REVIEWS MICROBIOLOGY
- The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
- (2008) B. L. Cantarel et al. NUCLEIC ACIDS RESEARCH
- Evolution of Mammals and Their Gut Microbes
- (2008) R. E. Ley et al. SCIENCE
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