Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages
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Title
Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages
Authors
Keywords
Cu pollution, Metatranscriptomics, Temporality, Phages, Microbial adaptation, Soil functioning
Journal
Microbiome
Volume 6, Issue 1, Pages -
Publisher
Springer Nature
Online
2018-12-13
DOI
10.1186/s40168-018-0606-1
References
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Note: Only part of the references are listed.- Long-term industrial metal contamination unexpectedly shaped diversity and activity response of sediment microbiome
- (2018) Samuel Jacquiod et al. JOURNAL OF HAZARDOUS MATERIALS
- Drought Legacy Effects on the Composition of Soil Fungal and Prokaryote Communities
- (2018) Annelein Meisner et al. Frontiers in Microbiology
- Taxonomic variability and functional stability in microbial communities infected by phages
- (2017) Stilianos Louca et al. ENVIRONMENTAL MICROBIOLOGY
- Lysogeny in nature: mechanisms, impact and ecology of temperate phages
- (2017) Cristina Howard-Varona et al. ISME Journal
- Deciphering conjugative plasmid permissiveness in wastewater microbiomes
- (2017) Samuel Jacquiod et al. MOLECULAR ECOLOGY
- Metal homeostasis and resistance in bacteria
- (2017) Pete Chandrangsu et al. NATURE REVIEWS MICROBIOLOGY
- Evolution caused by extreme events
- (2017) Peter R. Grant et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Antagonism correlates with metabolic similarity in diverse bacteria
- (2017) Jakob Russel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Legacy Effects on the Recovery of Soil Bacterial Communities from Extreme Temperature Perturbation
- (2017) Stephanie D. Jurburg et al. Frontiers in Microbiology
- Viruses in Soil Ecosystems: An Unknown Quantity Within an Unexplored Territory
- (2017) Kurt E. Williamson et al. Annual Review of Virology
- Autogenic succession and deterministic recovery following disturbance in soil bacterial communities
- (2017) Stephanie D. Jurburg et al. Scientific Reports
- Effectiveness of ecological rescue for altered soil microbial communities and functions
- (2016) Kadiya Calderón et al. ISME Journal
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- (2016) Gursonika Binepal et al. JOURNAL OF BACTERIOLOGY
- Pyrosequencing of rpoB uncovers a significant biogeographical pattern of rhizobial species in soybean rhizosphere
- (2016) Xing Xing Zhang et al. JOURNAL OF BIOGEOGRAPHY
- In depth analysis of the mechanism of action of metal-dependent sigma factors: characterization of CorE2 fromMyxococcus xanthus
- (2016) Francisco Javier Marcos-Torres et al. NUCLEIC ACIDS RESEARCH
- Metagenomes provide valuable comparative information on soil microeukaryotes
- (2016) Samuel Jacquiod et al. RESEARCH IN MICROBIOLOGY
- The Ecology and Evolution of Microbial Competition
- (2016) Melanie Ghoul et al. TRENDS IN MICROBIOLOGY
- Resource Partitioning between Bacteria, Fungi, and Protists in the Detritusphere of an Agricultural Soil
- (2016) Susanne Kramer et al. Frontiers in Microbiology
- Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies
- (2016) Jonathan Thorsen et al. Microbiome
- High taxonomic variability despite stable functional structure across microbial communities
- (2016) Stilianos Louca et al. Nature Ecology & Evolution
- Responses of Bacterial Communities to Simulated Climate Changes in Alpine Meadow Soil of the Qinghai-Tibet Plateau
- (2015) Junpeng Rui et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Combined effect of temperature and copper pollution on soil bacterial community: Climate change and regional variation aspects
- (2015) Isabel Henriques et al. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY
- Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter
- (2015) Lucia Žifčáková et al. ENVIRONMENTAL MICROBIOLOGY
- Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survival
- (2015) Chris Greening et al. ISME Journal
- The extent of functional redundancy changes as species’ roles shift in different environments
- (2015) Ingo Fetzer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Toxic metal resistance in biofilms: diversity of microbial responses and their evolution
- (2015) Sandrine Koechler et al. RESEARCH IN MICROBIOLOGY
- Bacteriophage lambda: Early pioneer and still relevant
- (2015) Sherwood R. Casjens et al. VIROLOGY
- Metatranscriptomic Analysis of Arctic Peat Soil Microbiota
- (2014) Alexander T. Tveit et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The long-term adaptation of bacterial communities in metal-contaminated sediments: a metaproteogenomic study
- (2014) David C. Gillan et al. ENVIRONMENTAL MICROBIOLOGY
- Changing precipitation pattern alters soil microbial community response to wet-up under a Mediterranean-type climate
- (2014) Romain L Barnard et al. ISME Journal
- Relationships between protein-encoding gene abundance and corresponding process are commonly assumed yet rarely observed
- (2014) Jennifer D Rocca et al. ISME Journal
- Identification of effective Pb resistant bacteria isolated fromLens culinarisgrowing in lead contaminated soils
- (2014) Salwa Harzalli Jebara et al. JOURNAL OF BASIC MICROBIOLOGY
- Shifts of tundra bacterial and archaeal communities along a permafrost thaw gradient in Alaska
- (2014) Jie Deng et al. MOLECULAR ECOLOGY
- The elemental composition of virus particles: implications for marine biogeochemical cycles
- (2014) Luis F. Jover et al. NATURE REVIEWS MICROBIOLOGY
- Soil biodiversity and soil community composition determine ecosystem multifunctionality
- (2014) C. Wagg et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Methylated nucleosides in tRNA and tRNA methyltransferases
- (2014) Hiroyuki Hori Frontiers in Genetics
- Swimming, Swarming, Twitching, and Chemotactic Responses of Cupriavidus metallidurans CH34 and Pseudomonas putida mt2 in the Presence of Cadmium
- (2013) Saba Shamim et al. ARCHIVES OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY
- Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses
- (2013) Steven J Blazewicz et al. ISME Journal
- Biofilm development and enhanced stress resistance of a model, mixed-species community biofilm
- (2013) Kai Wei Kelvin Lee et al. ISME Journal
- Copper Efflux Is Induced during Anaerobic Amino Acid Limitation in Escherichia coli To Protect Iron-Sulfur Cluster Enzymes and Biogenesis
- (2013) D. K. C. Fung et al. JOURNAL OF BACTERIOLOGY
- Soil Bacterial Community Shifts after Chitin Enrichment: An Integrative Metagenomic Approach
- (2013) Samuel Jacquiod et al. PLoS One
- Soil microbial and physical properties and their relations along a steep copper gradient
- (2012) Emmanuel Arthur et al. AGRICULTURE ECOSYSTEMS & ENVIRONMENT
- Selection for Cu-Tolerant Bacterial Communities with Altered Composition, but Unaltered Richness, via Long-Term Cu Exposure
- (2012) Jeanette Berg et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Abiotic Factors Shape Microbial Diversity in Sonoran Desert Soils
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- Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
- (2012) Davis J. McCarthy et al. NUCLEIC ACIDS RESEARCH
- Burkholderia dabaoshanensis sp. nov., a Heavy-Metal-Tolerant Bacteria Isolated from Dabaoshan Mining Area Soil in China
- (2012) Honghui Zhu et al. PLoS One
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- (2012) S. A. Placella et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2010) S. W. Kembel et al. BIOINFORMATICS
- Cu Exposure under Field Conditions Coselects for Antibiotic Resistance as Determined by a Novel Cultivation-Independent Bacterial Community Tolerance Assay
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- (2010) Frank Rasche et al. ISME Journal
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- (2010) Mona N. Högberg et al. NEW PHYTOLOGIST
- A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria
- (2010) S. Lucker et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Enzyme activities in vineyard soils long-term treated with copper-based fungicides
- (2010) David Fernández-Calviño et al. SOIL BIOLOGY & BIOCHEMISTRY
- The genomic basis of trophic strategy in marine bacteria
- (2009) F. M. Lauro et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The iron-sulfur clusters of dehydratases are primary intracellular targets of copper toxicity
- (2009) L. Macomber et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
- (2008) F Meyer et al. BMC BIOINFORMATICS
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