Antagonism correlates with metabolic similarity in diverse bacteria

RevEcoR: an R package for the reverse ecology analysis of microbiomes

(2016) Yang Cao et al.   BMC BIOINFORMATICS

Coexistence facilitates interspecific biofilm formation in complex microbial communities

(2016) Jonas S. Madsen et al.   ENVIRONMENTAL MICROBIOLOGY

Resource-dependent attenuation of species interactions during bacterial succession

(2016) Damian W Rivett et al.   ISME Journal

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Functional screening of abundant bacteria from acidic forest soil indicates the metabolic potential of Acidobacteria subdivision 1 for polysaccharide decomposition

(2015) Salvador Lladó et al.   BIOLOGY AND FERTILITY OF SOILS

Counteraction of antibiotic production and degradation stabilizes microbial communities

(2015) Eric D. Kelsic et al.   NATURE

Plant functional traits have globally consistent effects on competition

(2015) Georges Kunstler et al.   NATURE

Socially mediated induction and suppression of antibiosis during bacterial coexistence

(2015) Monica I. Abrudan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High prevalence of biofilm synergy among bacterial soil isolates in cocultures indicates bacterial interspecific cooperation

(2014) Dawei Ren et al.   ISME Journal

The influence of phylogenetic relatedness on species interactions among freshwater green algae in a mesocosm experiment

(2014) Patrick A. Venail et al.   JOURNAL OF ECOLOGY

Evolutionary relatedness does not predict competition and co-occurrence in natural or experimental communities of green algae

(2014) M. A. Alexandrou et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

High-Throughput Screening of Multispecies Biofilm Formation and Quantitative PCR-Based Assessment of Individual Species Proportions, Useful for Exploring Interspecific Bacterial Interactions

(2013) Dawei Ren et al.   MICROBIAL ECOLOGY

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

prfectBLAST: a platform-independent portable front end for the command terminal BLAST+ stand-alone suite

(2012) Perfecto Santiago-Sotelo et al.   BIOTECHNIQUES

The ability of soil bacteria to receive the conjugative IncP1 plasmid, pKJK10, is different in a mixed community compared to single strains

(2012) Claudia I. de la Cruz-Perera et al.   FEMS MICROBIOLOGY LETTERS

Antagonism influences assembly of a Bacillus guild in a local community and is depicted as a food-chain network

(2012) Rocío-Anaís Pérez-Gutiérrez et al.   ISME Journal

Ecological Populations of Bacteria Act as Socially Cohesive Units of Antibiotic Production and Resistance

(2012) O. X. Cordero et al.   SCIENCE

Phylogenetic limiting similarity and competitive exclusion

(2011) Cyrille Violle et al.   ECOLOGY LETTERS

Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species

(2011) O.-S. Kim et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Structure and Evolution of Streptomyces Interaction Networks in Soil and In Silico

(2011) Kalin Vetsigian et al.   PLOS BIOLOGY

Bacterial competition: surviving and thriving in the microbial jungle

(2009) Michael E. Hibbing et al.   NATURE REVIEWS MICROBIOLOGY

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

Does phylogenetic relatedness influence the strength of competition among vascular plants?

(2007) James F. Cahill et al.   PERSPECTIVES IN PLANT ECOLOGY EVOLUTION AND SYSTEMATICS