Comparative study of gut microbiota in wild and captive Malaysian Mahseer (Tor tambroides )

Metagenomics analysis of gut microbiota and immune modulation in zebrafish ( Danio rerio ) fed chitosan silver nanocomposites

(2017) R.M.C. Udayangani et al.   FISH & SHELLFISH IMMUNOLOGY

Interplay between the gut microbiota and immune responses of ayu ( Plecoglossus altivelis ) during Vibrio anguillarum infection

(2017) Li Nie et al.   FISH & SHELLFISH IMMUNOLOGY

Immune response induced by oral delivery of Bacillus subtilis spores expressing enolase of Clonorchis sinensis in grass carps ( Ctenopharyngodon idellus )

(2017) Hongye Jiang et al.   FISH & SHELLFISH IMMUNOLOGY

Fish intestinal microbiome: diversity and symbiosis unravelled by metagenomics

(2017) A.M. Tarnecki et al.   JOURNAL OF APPLIED MICROBIOLOGY

Metagenomics approach to the study of the gut microbiome structure and function in zebrafish Danio rerio fed with gluten formulated diet

(2017) Hyunmin Koo et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Gut content microbiota of introduced bigheaded carps ( Hypophthalmichthys spp.) inhabiting the largest shallow lake in Central Europe

(2017) Andrea K. Borsodi et al.   MICROBIOLOGICAL RESEARCH

Interactions between gut bacteria and bile in health and disease

(2017) Sarah L. Long et al.   MOLECULAR ASPECTS OF MEDICINE

Navigating the Gut Buffet: Control of Polysaccharide Utilization in Bacteroides spp.

(2017) Nathan D. Schwalm et al.   TRENDS IN MICROBIOLOGY

Combined effects of exogenous enzymes and probiotic on Nile tilapia (Oreochromis niloticus) growth, intestinal morphology and microbiome

(2016) Ayodeji A. Adeoye et al.   AQUACULTURE

Statistical evaluation of methods for identification of differentially abundant genes in comparative metagenomics

(2016) Viktor Jonsson et al.   BMC GENOMICS

Effect of short chain fructooligosaccharides (scFOS) on immunological status and gut microbiota of gilthead sea bream (Sparus aurata) reared at two temperatures

(2016) Inês Guerreiro et al.   FISH & SHELLFISH IMMUNOLOGY

Polysaccharide Degradation by the Intestinal Microbiota and Its Influence on Human Health and Disease

(2016) Darrell W. Cockburn et al.   JOURNAL OF MOLECULAR BIOLOGY

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Microbial Diversity and Parasitic Load in Tropical Fish of Different Environmental Conditions

(2016) Philipp Hennersdorf et al.   PLoS One

The gut microbiome and degradation enzyme activity of wild freshwater fishes influenced by their trophic levels

(2016) Han Liu et al.   Scientific Reports

Effect of dietary components on the gut microbiota of aquatic animals. A never-ending story?

(2015) E. Ringø et al.   AQUACULTURE NUTRITION

Isolation of potential probiotic Bacillus spp. and assessment of their subcellular components to induce immune responses in Labeo rohita against Aeromonas hydrophila

(2015) Dharmaraj Ramesh et al.   FISH & SHELLFISH IMMUNOLOGY

A comparative study on microbiota from the intestine of Prussian carp (Carassius gibelio) and their aquatic environmental compartments, using different molecular methods

(2015) E.N. Kashinskaya et al.   JOURNAL OF APPLIED MICROBIOLOGY

Diversity in the antibacterial potential of probiotic cultures Bacillus licheniformis MCC2514 and Bacillus licheniformis MCC2512

(2015) Papanna Shobharani et al.   RESEARCH IN MICROBIOLOGY

Bacterial community structure in the intestinal ecosystem of rainbow trout (Oncorhynchus mykiss) as revealed by pyrosequencing-based analysis of 16S rRNA genes

(2015) Miray Etyemez et al.   RESEARCH IN VETERINARY SCIENCE

Classifying the uncultivated microbial majority: A place for metagenomic data in the Candidatus proposal

(2015) Konstantinos T. Konstantinidis et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

The impact of rearing environment on the development of gut microbiota in tilapia larvae

(2015) Christos Giatsis et al.   Scientific Reports

How many16S-based studies should be included in a metagenomic conference? It may be a matter of etymology

(2014) Alfonso Esposito et al.   FEMS MICROBIOLOGY LETTERS

Complete mitochondrial genome of Malaysian Mahseer (Tor tambroides)

(2014) M.Y. Norfatimah et al.   GENE

Comparative study on gastrointestinal microbiota of eight fish species with different feeding habits

(2014) J. Li et al.   JOURNAL OF APPLIED MICROBIOLOGY

Characterization of the gut microbiota of three commercially valuable warmwater fish species

(2014) A.M. Larsen et al.   JOURNAL OF APPLIED MICROBIOLOGY

Quorum quenching bacteria Bacillus sp. QSI-1 protect zebrafish (Danio rerio) from Aeromonas hydrophila infection

(2014) Weihua Chu et al.   Scientific Reports

Polysaccharides utilization in human gut bacterium Bacteroides thetaiotaomicron: comparative genomics reconstruction of metabolic and regulatory networks

(2013) Dmitry A Ravcheev et al.   BMC GENOMICS

Fish Sedation, Anesthesia, Analgesia, and Euthanasia: Considerations, Methods, and Types of Drugs

(2013) D. L. Neiffer et al.   ILAR JOURNAL

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

The Species Dilemma of Northeast Indian Mahseer (Actinopterygii: Cyprinidae): DNA Barcoding in Clarifying the Riddle

(2013) Boni A. Laskar et al.   PLoS One

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

(2012) KAREN E. SULLAM et al.   MOLECULAR ECOLOGY

Dietary Lipid Levels Affect Growth and Fatty Acid Profiles of Malaysian MahseerTor tambroides

(2012) Ehsan Ramezani-Fard et al.   NORTH AMERICAN JOURNAL OF AQUACULTURE

The Cell Walls of Green Algae: A Journey through Evolution and Diversity

(2012) David S. Domozych et al.   Frontiers in Plant Science

Assessing and Improving Methods Used in Operational Taxonomic Unit-Based Approaches for 16S rRNA Gene Sequence Analysis

(2011) Patrick D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Malaysian mahseer, Tor tambroides (Bleeker), requires low dietary lipid levels with a preference for lipid sources with high omega-6 and low omega-3 polyunsaturated fatty acids

(2011) Wing-Keong Ng et al.   AQUACULTURE

Isolation and characterization of Citrobacter spp. from the intestine of grass carp Ctenopharyngodon idellus

(2011) Aijun Lü et al.   AQUACULTURE

Effects of dietary fish oil replacement by various vegetable oils on growth performance, body composition and fatty acid profile of juvenile Malaysian mahseer, Tor tambroides

(2011) M.S. KAMARUDIN et al.   AQUACULTURE NUTRITION

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes

(2011) Thomas M. Gihring et al.   ENVIRONMENTAL MICROBIOLOGY

Evidence for a core gut microbiota in the zebrafish

(2011) Guus Roeselers et al.   ISME Journal

Pyrosequencing of 16S rRNA gene amplicons to study the microbiota in the gastrointestinal tract of carp (Cyprinus carpio L.)

(2011) Maartje AHJ van Kessel et al.   AMB Express

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Depth distribution and ecological preferences of periphytic algae in Kenyir Lake, the largest tropical reservoir of Malaysia

(2010) A. J. M. Abdur Rouf et al.   CHINESE JOURNAL OF OCEANOLOGY AND LIMNOLOGY

Methanococci Use the Diaminopimelate Aminotransferase (DapL) Pathway for Lysine Biosynthesis

(2010) Y. Liu et al.   JOURNAL OF BACTERIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

(2009) Peter J. A. Cock et al.   NUCLEIC ACIDS RESEARCH

The dietary protein requirement of the Malaysian mahseer, Tor tambroides (Bleeker), and the lack of protein-sparing action by dietary lipid

(2008) Wing-Keong Ng et al.   AQUACULTURE

Studies on Bacillus subtilis and Lactobacillus acidophilus, as potential probiotics, on the immune response and resistance of Tilapia nilotica (Oreochromis niloticus) to challenge infections

(2008) Salah Mesalhy Aly et al.   FISH & SHELLFISH IMMUNOLOGY

In vitroevaluation on adherence and antimicrobial properties of a candidate probioticClostridium butyricumCB2 for farmed fish

(2008) X. Pan et al.   JOURNAL OF APPLIED MICROBIOLOGY