Immunoinformatics Approach for Epitope-Based Peptide Vaccine Design and Active Site Prediction against Polyprotein of Emerging Oropouche Virus

Overlapping CD8 + and CD4 + T-cell epitopes identification for the progression of epitope-based peptide vaccine from nucleocapsid and glycoprotein of emerging Rift Valley fever virus using immunoinformatics approach

(2017) Utpal Kumar Adhikari et al.   INFECTION GENETICS AND EVOLUTION

BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes

(2017) Martin Closter Jespersen et al.   NUCLEIC ACIDS RESEARCH

An Overview of Novel Adjuvants Designed for Improving Vaccine Efficacy

(2017) Srinivasa Reddy Bonam et al.   TRENDS IN PHARMACOLOGICAL SCIENCES

Vaccinomics Approach for Designing Potential Peptide Vaccine by Targeting Shigella spp. Serine Protease Autotransporter Subfamily Protein SigA

(2017) Arafat Rahman Oany et al.   Journal of Immunology Research

Computer-aided designing of immunosuppressive peptides based on IL-10 inducing potential

(2017) Gandharva Nagpal et al.   Scientific Reports

From ZikV genome to vaccine:in silicoapproach for the epitope-based peptide vaccine against Zika virus envelope glycoprotein

(2016) Aftab Alam et al.   IMMUNOLOGY

Detection of antibodies to Oropouche virus in non-human primates in Goiânia City, Goiás

(2016) Marize Moreira Gibrail et al.   Revista da Sociedade Brasileira de Medicina Tropical

Therapeutics Insight with Inclusive Immunopharmacology Explication of Human Rotavirus A for the Treatment of Diarrhea

(2016) Mohammad Uzzal Hossain et al.   Frontiers in Pharmacology

Combination of In Silico Methods in the Search for Potential CD4+ and CD8+ T Cell Epitopes in the Proteome of Leishmania braziliensis

(2016) Rafael de Freitas e Silva et al.   Frontiers in Immunology

PEPlife: A Repository of the Half-life of Peptides

(2016) Deepika Mathur et al.   Scientific Reports

Genetic analysis of members of the species Oropouche virus and identification of a novel M segment sequence

(2015) Natasha L. Tilston-Lunel et al.   JOURNAL OF GENERAL VIROLOGY

Generation of Recombinant Oropouche Viruses Lacking the Nonstructural Protein NSm or NSs

(2015) Natasha L. Tilston-Lunel et al.   JOURNAL OF VIROLOGY

Oropouche Virus Infection and Pathogenesis Are Restricted by MAVS, IRF-3, IRF-7, and Type I Interferon Signaling Pathways in Nonmyeloid Cells

(2015) Jose Luiz Proenca-Modena et al.   JOURNAL OF VIROLOGY

A comprehensive immunoinformatics and target site study revealed the corner-stone toward Chikungunya virus treatment

(2015) Md. Anayet Hasan et al.   MOLECULAR IMMUNOLOGY

Human Leukocyte Antigen Diversity: A Southern African Perspective

(2015) Mqondisi Tshabalala et al.   Journal of Immunology Research

Recent Advances of Vaccine Adjuvants for Infectious Diseases

(2015) Sujin Lee et al.   Immune Network

DISOPRED3: precise disordered region predictions with annotated protein-binding activity

(2014) David T. Jones et al.   BIOINFORMATICS

Improved PEP-FOLD Approach for Peptide and Miniprotein Structure Prediction

(2014) Yimin Shen et al.   Journal of Chemical Theory and Computation

Establishment of a minigenome system for Oropouche virus reveals the S genome segment to be significantly longer than reported previously

(2014) G. O. Acrani et al.   JOURNAL OF GENERAL VIROLOGY

Virus-Specific Antibody Secreting Cell, Memory B-cell, and Sero-Antibody Responses in the Human Influenza Challenge Model

(2014) Kuan-Ying Arthur Huang et al.   JOURNAL OF INFECTIOUS DISEASES

AllerTOP v.2—a server for in silico prediction of allergens

(2014) Ivan Dimitrov et al.   JOURNAL OF MOLECULAR MODELING

Isolation of Dengue Virus-Specific Memory B Cells with Live Virus Antigen from Human Subjects following Natural Infection Reveals the Presence of Diverse Novel Functional Groups of Antibody Clones

(2014) S. A. Smith et al.   JOURNAL OF VIROLOGY

In silico predicted mycobacterial epitope elicits in vitro T-cell responses

(2014) Md Kawsar Khan et al.   MOLECULAR IMMUNOLOGY

Orthobunyaviruses: recent genetic and structural insights

(2014) Richard M. Elliott   NATURE REVIEWS MICROBIOLOGY

Simultaneous Assessment of Rotavirus-Specific Memory B Cells and Serological Memory after B Cell Depletion Therapy with Rituximab

(2014) Daniel Herrera et al.   PLoS One

Spread of Oropouche Virus into the Central Nervous System in Mouse

(2014) Rodrigo Santos et al.   Viruses-Basel

AllergenFP: allergenicity prediction by descriptor fingerprints

(2013) I. Dimitrov et al.   BIOINFORMATICS

Designing of interferon-gamma inducing MHC class-II binders

(2013) Sandeep Kumar Dhanda et al.   Biology Direct

Prediction of IL4 Inducing Peptides

(2013) Sandeep Kumar Dhanda et al.   Clinical & Developmental Immunology

Bioinformatics Resources and Tools for Conformational B-Cell Epitope Prediction

(2013) Pingping Sun et al.   Computational and Mathematical Methods in Medicine

PDBsum additions

(2013) Tjaart A. P. de Beer et al.   NUCLEIC ACIDS RESEARCH

Improved Method for Linear B-Cell Epitope Prediction Using Antigen’s Primary Sequence

(2013) Harinder Singh et al.   PLoS One

In Silico Approach for Predicting Toxicity of Peptides and Proteins

(2013) Sudheer Gupta et al.   PLoS One

Properties of MHC Class I Presented Peptides That Enhance Immunogenicity

(2013) Jorg J. A. Calis et al.   PLoS Computational Biology

Developing vaccines in the era of genomics: a decade of reverse vaccinology

(2012) K.L. Seib et al.   CLINICAL MICROBIOLOGY AND INFECTION

Human Rotavirus-Specific IgM Memory B Cells Have Differential Cloning Efficiencies and Switch Capacities and Play a Role in Antiviral Immunity In Vivo

(2012) C. F. Narvaez et al.   JOURNAL OF VIROLOGY

PEP-FOLD: an updated de novo structure prediction server for both linear and disulfide bonded cyclic peptides

(2012) P. Thevenet et al.   NUCLEIC ACIDS RESEARCH

Improving the Physical Realism and Structural Accuracy of Protein Models by a Two-Step Atomic-Level Energy Minimization

(2011) Dong Xu et al.   BIOPHYSICAL JOURNAL

Trends in vaccine adjuvants

(2011) Virgil EJC Schijns et al.   Expert Review of Vaccines

Human leukocyte antigen class I (A, B, C) and II (DRB1) diversity in the black and Caucasian South African population

(2011) Maria Paximadis et al.   HUMAN IMMUNOLOGY

ViPR: an open bioinformatics database and analysis resource for virology research

(2011) Brett E. Pickett et al.   NUCLEIC ACIDS RESEARCH

Automated comparative protein structure modeling with SWISS-MODEL and Swiss-PdbViewer: A historical perspective

(2010) Nicolas Guex et al.   ELECTROPHORESIS

Detection of mumps virus-specific memory B cells by transfer of peripheral blood mononuclear cells into immune-deficient mice

(2010) Corinne Vandermeulen et al.   IMMUNOLOGY

I-TASSER: a unified platform for automated protein structure and function prediction

(2010) Ambrish Roy et al.   Nature Protocols

Identification of CD8+ T Cell Epitopes in the West Nile Virus Polyprotein by Reverse-Immunology Using NetCTL

(2010) Mette Voldby Larsen et al.   PLoS One

Cross-reactive CD8+T-cell immunity between the pandemic H1N1-2009 and H1N1-1918 influenza A viruses

(2010) Stephanie Gras et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative analysis of influenza virus-specific B cell memory generated by different routes of inactivated virus vaccination

(2010) Hye Mee Joo et al.   VACCINE

AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading

(2009) Oleg Trott et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility

(2009) Garrett M. Morris et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

QMEAN server for protein model quality estimation

(2009) Pascal Benkert et al.   NUCLEIC ACIDS RESEARCH

SITEHOUND-web: a server for ligand binding site identification in protein structures

(2009) M. Hernandez et al.   NUCLEIC ACIDS RESEARCH

ElliPro: a new structure-based tool for the prediction of antibody epitopes

(2008) Julia Ponomarenko et al.   BMC BIOINFORMATICS

I-TASSER server for protein 3D structure prediction

(2008) Yang Zhang   BMC BIOINFORMATICS

NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8–11

(2008) Claus Lundegaard et al.   NUCLEIC ACIDS RESEARCH