Combining pseudo dinucleotide composition with the Z curve method to improve the accuracy of predicting DNA elements: a case study in recombination spots

Recombination spot identification Based on gapped k-mers

(2016) Rong Wang et al.   Scientific Reports

iDNA-Methyl: Identifying DNA methylation sites via pseudo trinucleotide composition

(2015) Zi Liu et al.   ANALYTICAL BIOCHEMISTRY

iRNA-Methyl: Identifying N6-methyladenosine sites using pseudo nucleotide composition

(2015) Wei Chen et al.   ANALYTICAL BIOCHEMISTRY

iORI-PseKNC: A predictor for identifying origin of replication with pseudo k-tuple nucleotide composition

(2015) Wen-Chao Li et al.   CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS

Pseudo nucleotide composition or PseKNC: an effective formulation for analyzing genomic sequences

(2015) Wei Chen et al.   Molecular BioSystems

ZCURVE 3.0: identify prokaryotic genes with higher accuracy as well as automatically and accurately select essential genes

(2015) Zhi-Gang Hua et al.   NUCLEIC ACIDS RESEARCH

iTIS-PseTNC: A sequence-based predictor for identifying translation initiation site in human genes using pseudo trinucleotide composition

(2014) Wei Chen et al.   ANALYTICAL BIOCHEMISTRY

PseKNC: A flexible web server for generating pseudo K-tuple nucleotide composition

(2014) Wei Chen et al.   ANALYTICAL BIOCHEMISTRY

iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition

(2014) Shou-Hui Guo et al.   BIOINFORMATICS

Sequence-based identification of recombination spots using pseudo nucleic acid representation and recursive feature extraction by linear kernel SVM

(2014) Liqi Li et al.   BMC BIOINFORMATICS

iRSpot-TNCPseAAC: Identify Recombination Spots with Trinucleotide Composition and Pseudo Amino Acid Components

(2014) Wang-Ren Qiu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Efficient Inference of Recombination Hot Regions in Bacterial Genomes

(2014) Koji Yahara et al.   MOLECULAR BIOLOGY AND EVOLUTION

iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition

(2014) Hao Lin et al.   NUCLEIC ACIDS RESEARCH

On the doubt about margin explanation of boosting

(2013) Wei Gao et al.   ARTIFICIAL INTELLIGENCE

Z curve theory-based analysis of the dynamic nature of nucleosome positioning in Saccharomyces cerevisiae

(2013) Xueting Wu et al.   GENE

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition

(2013) Wei Chen et al.   NUCLEIC ACIDS RESEARCH

A Hierarchical Combination of Factors Shapes the Genome-wide Topography of Yeast Meiotic Recombination Initiation

(2011) Jing Pan et al.   CELL

Sequence-dependent prediction of recombination hotspots in Saccharomyces cerevisiae

(2011) Guoqing Liu et al.   JOURNAL OF THEORETICAL BIOLOGY

Recognition of prokaryotic promoters based on a novel variable-window Z-curve method

(2011) Kai Song   NUCLEIC ACIDS RESEARCH

ReDB: A meiotic homologous recombination rate database

(2010) Fei Sang et al.   CHINESE SCIENCE BULLETIN

Human Pol II promoter recognition based on primary sequences and free energy of dinucleotides

(2008) Jian-Yi Yang et al.   BMC BIOINFORMATICS

Widely Conserved Recombination Patterns among Single-Stranded DNA Viruses

(2008) P. Lefeuvre et al.   JOURNAL OF VIROLOGY