Can we rely on selected genetic markers for population identification? Evidence from coastal Atlantic cod

Stable coexistence of genetically divergent Atlantic cod ecotypes at multiple spatial scales

(2018) Halvor Knutsen et al.   Evolutionary Applications

Developing reduced SNP assays from whole-genome sequence data to estimate introgression in an organism with complex genetic patterns, the Iberian honeybee (Apis mellifera iberiensis )

(2018) Dora Henriques et al.   Evolutionary Applications

Inferring genetic connectivity in real populations, exemplified by coastal and oceanic Atlantic cod

(2018) Ingrid Spies et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Trans-oceanic genomic divergence of Atlantic cod ecotypes is associated with large inversions

(2017) P R Berg et al.   HEREDITY

Estimating cod egg developmental stage based on DNA concentration

(2017) Sigurd Heiberg Espeland et al.   ICES JOURNAL OF MARINE SCIENCE

“Real-time” genetic monitoring of a commercial fishery on the doorstep of an MPA reveals unique insights into the interaction between coastal and migratory forms of the Atlantic cod

(2017) Torild Johansen et al.   ICES JOURNAL OF MARINE SCIENCE

Genome architecture enables local adaptation of Atlantic cod despite high connectivity

(2017) Julia M. I. Barth et al.   MOLECULAR ECOLOGY

“Islands of Divergence” in the Atlantic Cod Genome Represent Polymorphic Chromosomal Rearrangements

(2016) Marte Sodeland et al.   Genome Biology and Evolution

Two adjacent inversions maintain genomic differentiation between migratory and stationary ecotypes of Atlantic cod

(2016) Tina Graceline Kirubakaran et al.   MOLECULAR ECOLOGY

Eight decades of sampling reveal a contemporary novel fish assemblage in coastal nursery habitats

(2015) Caren Barceló et al.   GLOBAL CHANGE BIOLOGY

Gene-associated markers can assign origin in a weakly structured fish, Atlantic herring

(2015) Dorte Bekkevold et al.   ICES JOURNAL OF MARINE SCIENCE

Single-nucleotide polymorphisms (SNPs) identified through genotyping-by-sequencing improve genetic stock identification of Chinook salmon (Oncorhynchus tshawytscha) from western Alaska

(2014) Wesley A. Larson et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Spatiotemporal SNP analysis reveals pronounced biocomplexity at the northern range margin of Atlantic codGadus morhua

(2013) Nina Overgaard Therkildsen et al.   Evolutionary Applications

Oceanographic connectivity and environmental correlates of genetic structuring in Atlantic herring in the Baltic Sea

(2013) Amber GF Teacher et al.   Evolutionary Applications

Outlier SNP markers reveal fine-scale genetic structuring across European hake populations (Merluccius merluccius)

(2013) Ilaria Milano et al.   MOLECULAR ECOLOGY

Population-scale sequencing reveals genetic differentiation due to local adaptation in Atlantic herring

(2012) S. Lamichhaney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene-associated markers provide tools for tackling illegal fishing and false eco-certification

(2012) Einar E. Nielsen et al.   Nature Communications

Evaluation of approaches for identifying population informative markers from high density SNP Chips

(2011) Samantha Wilkinson et al.   BMC GENETICS

Detection of outlier loci and their utility for fisheries management

(2011) Michael A. Russello et al.   Evolutionary Applications

Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges

(2011) S. J. HELYAR et al.   Molecular Ecology Resources

Comparison ofFSToutlier tests for SNP loci under selection

(2011) SHAWN R. NARUM et al.   Molecular Ecology Resources

Outlier SNPs show more genetic structure between two Bay of Fundy metapopulations of Atlantic salmon than do neutral SNPs

(2011) HEATHER FREAMO et al.   Molecular Ecology Resources

Small-scale genetic structure in a marine population in relation to water circulation and egg characteristics

(2010) Lorenzo Ciannelli et al.   ECOLOGY

Detecting population structure in a high gene-flow species, Atlantic herring (Clupea harengus): direct, simultaneous evaluation of neutral vs putatively selected loci

(2010) C André et al.   HEREDITY

Are low but statistically significant levels of genetic differentiation in marine fishes ‘biologically meaningful’? A case study of coastal Atlantic cod

(2010) H. KNUTSEN et al.   MOLECULAR ECOLOGY

Larval Dispersal and Marine Population Connectivity

(2008) Robert K. Cowen et al.   Annual Review of Marine Science

Paradigm shifts in marine fisheries genetics: ugly hypotheses slain by beautiful facts

(2008) Lorenz Hauser et al.   FISH AND FISHERIES

Larval group differentiation in Atlantic cod (Gadus morhua) inside and outside the Gullmar Fjord

(2007) Vidar Øresland et al.   FISHERIES RESEARCH

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources