Maintaining and breaking symmetry in homomeric coiled-coil assemblies

Electronic Conductivity in Biomimetic α-Helical Peptide Nanofibers and Gels

(2018) Nicole L. Ing et al.   ACS Nano

Membrane-spanning α-helical barrels as tractable protein-design targets

(2017) Ai Niitsu et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

CCBuilder 2.0: Powerful and accessible coiled-coil modeling

(2017) Christopher W. Wood et al.   PROTEIN SCIENCE

Coiled Coils – A Model System for the 21st Century

(2017) Andrei N. Lupas et al.   TRENDS IN BIOCHEMICAL SCIENCES

Functional determinants of protein assembly into homomeric complexes

(2017) L. Therese Bergendahl et al.   Scientific Reports

X-ray Crystallographic Structure and Solution Behavior of an Antiparallel Coiled-Coil Hexamer Formed by de Novo Peptides

(2016) Ryan K. Spencer et al.   BIOCHEMISTRY

Conformational Activation of a Transmembrane Proton Channel from Constant pH Molecular Dynamics

(2016) Wei Chen et al.   Journal of Physical Chemistry Letters

A monodisperse transmembrane α-helical peptide barrel

(2016) Kozhinjampara R. Mahendran et al.   Nature Chemistry

Installing hydrolytic activity into a completely de novo protein framework

(2016) Antony J. Burton et al.   Nature Chemistry

Membrane insertion of a Tc toxin in near-atomic detail

(2016) Christos Gatsogiannis et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Control of the negative IREStrans-acting factor KHSRP by ubiquitination

(2016) Yu-An Kung et al.   NUCLEIC ACIDS RESEARCH

A De Novo Designed Coiled-Coil Peptide with a Reversible pH-Induced Oligomerization Switch

(2016) Robert Lizatović et al.   STRUCTURE

Membrane insertion of a Tc toxin in near-atomic detail

(2016) Christos Gatsogiannis et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Critical evaluation ofin silicomethods for prediction of coiled-coil domains in proteins

(2015) Chen Li et al.   BRIEFINGS IN BIOINFORMATICS

De novo protein design: how do we expand into the universe of possible protein structures?

(2015) Derek N Woolfson et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB

(2015) James A. Maier et al.   Journal of Chemical Theory and Computation

Modular Design of Self-Assembling Peptide-Based Nanotubes

(2015) Natasha C. Burgess et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Principles of assembly reveal a periodic table of protein complexes

(2015) S. E. Ahnert et al.   SCIENCE

Structural Plasticity of Helical Nanotubes Based on Coiled-Coil Assemblies

(2015) E.H. Egelman et al.   STRUCTURE

Engineered Coiled-Coil Protein Microfibers

(2014) Jasmin Hume et al.   BIOMACROMOLECULES

High performance in silico virtual drug screening on many-core processors

(2014) Simon McIntosh-Smith et al.   INTERNATIONAL JOURNAL OF HIGH PERFORMANCE COMPUTING APPLICATIONS

Constant pH Replica Exchange Molecular Dynamics in Explicit Solvent Using Discrete Protonation States: Implementation, Testing, and Validation

(2014) Jason M. Swails et al.   Journal of Chemical Theory and Computation

Exploring alternate states and oligomerization preferences of coiled-coils byde novostructure modeling

(2014) Sebastian Rämisch et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Computational design of water-soluble α-helical barrels

(2014) Andrew R. Thomson et al.   SCIENCE

High thermodynamic stability of parametrically designed helical bundles

(2014) Po-Ssu Huang et al.   SCIENCE

Structure-Based Characterization of Multiprotein Complexes

(2014) Markus Wiederstein et al.   STRUCTURE

ThePDB_REDOserver for macromolecular structure model optimization

(2014) Robbie P. Joosten et al.   IUCrJ

How good are my data and what is the resolution?

(2013) Philip R. Evans et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data

(2013) Daniel R. Roe et al.   Journal of Chemical Theory and Computation

Rational Design of Helical Nanotubes from Self-Assembly of Coiled-Coil Lock Washers

(2013) Chunfu Xu et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Icosahedral bacteriophage ΦX174 forms a tail for DNA transport during infection

(2013) Lei Sun et al.   NATURE

Towards automated crystallographic structure refinement withphenix.refine

(2012) Pavel V. Afonine et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Enhancing Conformation and Protonation State Sampling of Hen Egg White Lysozyme Using pH Replica Exchange Molecular Dynamics

(2012) Jason M. Swails et al.   Journal of Chemical Theory and Computation

Overview of theCCP4 suite and current developments

(2011) Martyn D. Winn et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

A de novo peptide hexamer with a mutable channel

(2011) Nathan R Zaccai et al.   Nature Chemical Biology

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

The Evolution and Structure Prediction of Coiled Coils across All Genomes

(2010) Owen J.L. Rackham et al.   JOURNAL OF MOLECULAR BIOLOGY

Probing Designability via a Generalized Model of Helical Bundle Geometry

(2010) Gevorg Grigoryan et al.   JOURNAL OF MOLECULAR BIOLOGY

Crystallographic ab initio protein structure solution below atomic resolution

(2009) Dayté D Rodríguez et al.   NATURE METHODS

Improved prediction of protein side-chain conformations with SCWRL4

(2009) Georgii G. Krivov et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Probing the “Dark Matter” of Protein Fold Space

(2009) William R. Taylor et al.   STRUCTURE

A Periodic Table of Coiled-Coil Protein Structures

(2008) Efrosini Moutevelis et al.   JOURNAL OF MOLECULAR BIOLOGY

CC+: a relational database of coiled-coil structures

(2008) O. D. Testa et al.   NUCLEIC ACIDS RESEARCH