High-affinity allergen-specific human antibodies cloned from single IgE B cell transcriptomes

Treating cat allergy with monoclonal IgG antibodies that bind allergen and prevent IgE engagement

(2018) J. M. Orengo et al.   Nature Communications

Immunology of Food Allergy

(2017) Leticia Tordesillas et al.   IMMUNITY

Characterization of the B-cell receptor repertoires in peanut allergic subjects undergoing oral immunotherapy

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Single-cell sequencing reveals dissociation-induced gene expression in tissue subpopulations

(2017) Susanne C van den Brink et al.   NATURE METHODS

Single-Cell RNA-Seq Analysis of Infiltrating Neoplastic Cells at the Migrating Front of Human Glioblastoma

(2017) Spyros Darmanis et al.   Cell Reports

B Cell Intrinsic Mechanisms Constraining IgE Memory

(2017) Brice Laffleur et al.   Frontiers in Immunology

Single B-cell deconvolution of peanut-specific antibody responses in allergic patients

(2016) Ramona A. Hoh et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Human B-cell isotype switching origins of IgE

(2016) Timothy J. Looney et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data: Table 1.

(2015) Namita T. Gupta et al.   BIOINFORMATICS

Syk Tyrosine Kinase Is Critical for B Cell Antibody Responses and Memory B Cell Survival

(2015) Jochen A. Ackermann et al.   JOURNAL OF IMMUNOLOGY

Regulation of bifurcating B cell trajectories by mutual antagonism between transcription factors IRF4 and IRF8

(2015) Heping Xu et al.   NATURE IMMUNOLOGY

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Bridger: a new framework for de novo transcriptome assembly using RNA-seq data

(2015) Zheng Chang et al.   GENOME BIOLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

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Human Responses to Influenza Vaccination Show Seroconversion Signatures and Convergent Antibody Rearrangements

(2014) Katherine J.L. Jackson et al.   Cell Host & Microbe

Human IgE+ B cells are derived from T cell–dependent and T cell–independent pathways

(2014) Magdalena A. Berkowska et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

The promise and challenge of high-throughput sequencing of the antibody repertoire

(2014) George Georgiou et al.   NATURE BIOTECHNOLOGY

Full-length RNA-seq from single cells using Smart-seq2

(2014) Simone Picelli et al.   Nature Protocols

Helminth Allergens, Parasite-Specific IgE, and Its Protective Role in Human Immunity

(2014) Colin Matthew Fitzsimmons et al.   Frontiers in Immunology

What Is the Source of Serum Allergen-Specific IgE?

(2013) Julia Eckl-Dorna et al.   CURRENT ALLERGY AND ASTHMA REPORTS

IgE cross-reactivity between the major peanut allergen Ara h 2 and the nonhomologous allergens Ara h 1 and Ara h 3

(2013) Merima Bublin et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Galectin 1 Modulates Plasma Cell Homeostasis and Regulates the Humoral Immune Response

(2013) A. Anginot et al.   JOURNAL OF IMMUNOLOGY

IgBLAST: an immunoglobulin variable domain sequence analysis tool

(2013) Jian Ye et al.   NUCLEIC ACIDS RESEARCH

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Snakemake--a scalable bioinformatics workflow engine

(2012) J. Koster et al.   BIOINFORMATICS

Fluorescent In Vivo Detection Reveals that IgE+ B Cells Are Restrained by an Intrinsic Cell Fate Predisposition

(2012) Zhiyong Yang et al.   IMMUNITY

Sequence and Structural Convergence of Broad and Potent HIV Antibodies That Mimic CD4 Binding

(2011) J. F. Scheid et al.   SCIENCE

A Role for Lysosomal-Associated Protein Transmembrane 5 in the Negative Regulation of Surface B Cell Receptor Levels and B Cell Activation

(2010) R. Ouchida et al.   JOURNAL OF IMMUNOLOGY

S100A4 and Metastasis

(2009) Kjetil Boye et al.   AMERICAN JOURNAL OF PATHOLOGY

S100A6 – New facts and features

(2009) Wiesława Leśniak et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Rapid cloning of high-affinity human monoclonal antibodies against influenza virus

(2008) Jens Wrammert et al.   NATURE

IMGT(R), the international ImMunoGeneTics information system(R)

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