A supergene determines highly divergent male reproductive morphs in the ruff

Diversity of Nuptial Plumages in Male RuffsPhilomachus pugnax

(2014) Johan van Rhijn et al.   ARDEA

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution

(2014) Takeshi Kawakami et al.   MOLECULAR ECOLOGY

Estrogen receptor   polymorphism in a species with alternative behavioral phenotypes

(2014) B. M. Horton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-genome analyses resolve early branches in the tree of life of modern birds

(2014) E. D. Jarvis et al.   SCIENCE

Informed and automated k-mer size selection for genome assembly

(2013) R. Chikhi et al.   BIOINFORMATICS

A dominant allele controls development into female mimic male and diminutive female ruffs

(2013) D. B. Lank et al.   Biology Letters

Genetic mapping of the female mimic morph locus in the ruff

(2013) Lindsay L Farrell et al.   BMC GENETICS

An improvement on the maximum likelihood reconstruction of pedigrees from marker data

(2013) J Wang   HEREDITY

Replicated high-density genetic maps of two great tit populations reveal fine-scale genomic departures from sex-equal recombination rates

(2013) K van Oers et al.   HEREDITY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

China has the capacity to lead in carbon trading

(2013) Qiang Wang   NATURE

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Sequence-Based Detection and Breakpoint Assembly of Polymorphic Inversions

(2012) R. B. Corbett-Detig et al.   GENETICS

Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology

(2012) Adam C. English et al.   PLoS One

Isolation, characterization and predicted genome locations of ruff (Philomachus pugnax, AVES) microsatellite loci

(2012) Lindsay L. Farrell et al.   Conservation Genetics Resources

Gene expression divergence and nucleotide differentiation between males of different color morphs and mating strategies in the ruff

(2012) Robert Ekblom et al.   Ecology and Evolution

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

DHHC-7 and -21 are palmitoylacyltransferases for sex steroid receptors

(2011) Ali Pedram et al.   MOLECULAR BIOLOGY OF THE CELL

Chromosomal rearrangements maintain a polymorphic supergene controlling butterfly mimicry

(2011) Mathieu Joron et al.   NATURE

A framework for variation discovery and genotyping using next-generation DNA sequencing data

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Scaffolding pre-assembled contigs using SSPACE

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A SNP based linkage map of the turkey genome reveals multiple intrachromosomal rearrangements between the Turkey and Chicken genomes

(2010) Muhammad L Aslam et al.   BMC GENOMICS

PLC regulation: emerging pictures for molecular mechanisms

(2010) Tom D. Bunney et al.   TRENDS IN BIOCHEMICAL SCIENCES

How and Why Chromosome Inversions Evolve

(2010) Mark Kirkpatrick   PLOS BIOLOGY

The Sequence Alignment/Map format and SAMtools

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ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Centromere assembly requires the direct recognition of CENP-A nucleosomes by CENP-N

(2009) Christopher W. Carroll et al.   NATURE CELL BIOLOGY

Sexual Conflict Resolved by Invasion of a Novel Sex Determiner in Lake Malawi Cichlid Fishes

(2009) R. B. Roberts et al.   SCIENCE

Revisiting the Impact of Inversions in Evolution: From Population Genetic Markers to Drivers of Adaptive Shifts and Speciation?

(2008) Ary A. Hoffmann et al.   Annual Review of Ecology Evolution and Systematics

Endocrine and genomic architecture of life history trade-offs in an avian model of social behavior

(2008) Donna L. Maney   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

(2008) V. Ter-Hovhannisyan et al.   GENOME RESEARCH

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One