Re-purposing 16S rRNA gene sequence data from within case paired tumor biopsy and tumor-adjacent biopsy or fecal samples to identify microbial markers for colorectal cancer

Multi-cohort analysis of colorectal cancer metagenome identified altered bacteria across populations and universal bacterial markers

(2018) Zhenwei Dai et al.   Microbiome

Microbial markers in the diagnosis of colorectal cancer: the promise, reality and challenge

(2017) Todd Z DeSantis et al.   Future Microbiology

Streptococcus gallolyticus subsp. gallolyticus promotes colorectal tumor development

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Targeting Angiogenesis in Colorectal Cancer

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KEGG: new perspectives on genomes, pathways, diseases and drugs

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Genotoxicity of Cytolethal Distending Toxin (CDT) on Isogenic Human Colorectal Cell Lines: Potential Promoting Effects for Colorectal Carcinogenesis

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Metabolic and Community Synergy of Oral Bacteria in Colorectal Cancer

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Colorectal Cancer and the Human Gut Microbiome: Reproducibility with Whole-Genome Shotgun Sequencing

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Gut biogeography of the bacterial microbiota

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Gut microbiome development along the colorectal adenoma–carcinoma sequence

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Gut mucosal microbiome across stages of colorectal carcinogenesis

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Virulence genes are a signature of the microbiome in the colorectal tumor microenvironment

(2015) Michael B. Burns et al.   Genome Medicine

The vocabulary of microbiome research: a proposal

(2015) Julian R. Marchesi et al.   Microbiome

Building Predictive Models inRUsing thecaretPackage

(2015) Max Kuhn   Journal of Statistical Software

The Human Gut Microbiome as a Screening Tool for Colorectal Cancer

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Microbes, Microbiota, and Colon Cancer

(2014) Cynthia L. Sears et al.   Cell Host & Microbe

Microbial mucosal colonic shifts associated with the development of colorectal cancer reveal the presence of different bacterial and archaeal biomarkers

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Potential of fecal microbiota for early-stage detection of colorectal cancer

(2014) G. Zeller et al.   Molecular Systems Biology

The gut microbiota, bacterial metabolites and colorectal cancer

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Microbiota organization is a distinct feature of proximal colorectal cancers

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Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

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Cancer as a metabolic disease: implications for novel therapeutics

(2013) T. N. Seyfried et al.   CARCINOGENESIS

Emerging roles of the microbiome in cancer

(2013) S. J. Bultman   CARCINOGENESIS

Fusobacterium nucleatum Promotes Colorectal Carcinogenesis by Modulating E-Cadherin/β-Catenin Signaling via its FadA Adhesin

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Substrate Cleavage Profiling Suggests a Distinct Function ofBacteroides fragilisMetalloproteinases (Fragilysin and Metalloproteinase II) at the Microbiome-Inflammation-Cancer Interface

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Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Fusobacterium Is Associated with Colorectal Adenomas

(2013) Amber N. McCoy et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

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Stool Microbiome and Metabolome Differences between Colorectal Cancer Patients and Healthy Adults

(2013) Tiffany L. Weir et al.   PLoS One

The Gut Microbiome Modulates Colon Tumorigenesis

(2013) J. P. Zackular et al.   mBio

Diversified pattern of the human colorectal cancer microbiome

(2013) Jiawei Geng et al.   Gut Pathogens

Co-occurrence of anaerobic bacteria in colorectal carcinomas

(2013) René L Warren et al.   Microbiome

Lipopolysaccharide Causes an Increase in Intestinal Tight Junction Permeability in Vitro and in Vivo by Inducing Enterocyte Membrane Expression and Localization of TLR-4 and CD14

(2012) Shuhong Guo et al.   AMERICAN JOURNAL OF PATHOLOGY

The sensitivity and specificity of guaiac and immunochemical fecal occult blood tests for the detection of advanced colonic adenomas and cancer

(2012) Clarence K. W. Wong et al.   INTERNATIONAL JOURNAL OF COLORECTAL DISEASE

Increased rectal microbial richness is associated with the presence of colorectal adenomas in humans

(2012) Nina Sanapareddy et al.   ISME Journal

Developing a metagenomic view of xenobiotic metabolism

(2012) Henry J. Haiser et al.   PHARMACOLOGICAL RESEARCH

Evaluation of 16S rDNA-Based Community Profiling for Human Microbiome Research

(2012)   PLoS One

Human Intestinal Lumen and Mucosa-Associated Microbiota in Patients with Colorectal Cancer

(2012) Weiguang Chen et al.   PLoS One

Is It Time for a Metagenomic Basis of Therapeutics?

(2012) H. J. Haiser et al.   SCIENCE

Inhibition of Ras for cancer treatment: the search continues

(2011) Antonio T Baines et al.   Future Medicinal Chemistry

Genomic analysis identifies association of Fusobacterium with colorectal carcinoma

(2011) A. D. Kostic et al.   GENOME RESEARCH

Towards the Human Colorectal Cancer Microbiome

(2011) Julian R. Marchesi et al.   PLoS One

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

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Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

(2010) Marcus J. Claesson et al.   NUCLEIC ACIDS RESEARCH