Global and site-specific analysis of protein glycosylation in complex biological systems with Mass Spectrometry

Mass Spectrometry-Based Chemical and Enzymatic Methods for Global Analysis of Protein Glycosylation

(2018) Haopeng Xiao et al.   ACCOUNTS OF CHEMICAL RESEARCH

Impact of Phosphorylation on the Mass Spectrometry Quantification of Intact Phosphoproteins

(2018) Zhijie Wu et al.   ANALYTICAL CHEMISTRY

Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and α-1B-Glycoprotein

(2018) Shisheng Sun et al.   ANALYTICAL CHEMISTRY

Dissecting the dissociation patterns of fucosylated glycopeptides undergoing CID: a case study in improving automated glycopeptide analysis scoring algorithms

(2018) Jude C. Lakbub et al.   Analytical Methods

Mass Spectrometry Approaches to Glycomic and Glycoproteomic Analyses

(2018) L. Renee Ruhaak et al.   CHEMICAL REVIEWS

Mass spectrometric analysis of the N -glycoproteome in statin-treated liver cells with two lectin-independent chemical enrichment methods

(2018) Haopeng Xiao et al.   INTERNATIONAL JOURNAL OF MASS SPECTROMETRY

Development of a data independent acquisition mass spectrometry workflow to enable glycopeptide analysis without predefined glycan compositional knowledge

(2018) Chi-Hung Lin et al.   Journal of Proteomics

Membrane glycomics reveal heterogeneity and quantitative distribution of cell surface sialylation

(2018) Diane Dayoung Park et al.   Chemical Science

An enrichment method based on synergistic and reversible covalent interactions for large-scale analysis of glycoproteins

(2018) Haopeng Xiao et al.   Nature Communications

Benchmarking common quantification strategies for large-scale phosphoproteomics

(2018) Alexander Hogrebe et al.   Nature Communications

A One-Step Chemoenzymatic Labeling Strategy for Probing Sialylated Thomsen–Friedenreich Antigen

(2018) Liuqing Wen et al.   ACS Central Science

Quantitative Profiling of Protein O-GlcNAcylation Sites by an Isotope-Tagged Cleavable Linker

(2018) Ke Qin et al.   ACS Chemical Biology

Serum glycosylation characterization of osteonecrosis of the femoral head by mass spectrometry

(2017) Ting Song et al.   EUROPEAN JOURNAL OF MASS SPECTROMETRY

Two New Tools for Glycopeptide Analysis Researchers: A Glycopeptide Decoy Generator and a Large Data Set of Assigned CID Spectra of Glycopeptides

(2017) Jude C. Lakbub et al.   JOURNAL OF PROTEOME RESEARCH

Proteome-Wide Analysis of N-Glycosylation Stoichiometry Using SWATH Technology

(2017) Xiangyun Yang et al.   JOURNAL OF PROTEOME RESEARCH

Targeted Measurements of O- and N-Glycopeptides Show That Proteins in High Density Lipoprotein Particles Are Enriched with Specific Glycosylation Compared to Plasma

(2017) Muchena J. Kailemia et al.   JOURNAL OF PROTEOME RESEARCH

Multiple Reaction Monitoring for the Quantitation of Serum Protein Glycosylation Profiles: Application to Ovarian Cancer

(2017) Suzanne Miyamoto et al.   JOURNAL OF PROTEOME RESEARCH

Recent advances in methods for the analysis of protein o-glycosylation at proteome level

(2017) Xin You et al.   JOURNAL OF SEPARATION SCIENCE

Cell-Surface Glyco-Engineering by Exogenous Enzymatic Transfer Using a Bifunctional CMP-Neu5Ac Derivative

(2017) Chantelle J. Capicciotti et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Electron-Transfer/Higher-Energy Collision Dissociation (EThcD)-Enabled Intact Glycopeptide/Glycoproteome Characterization

(2017) Qing Yu et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Glycosylation Benchmark Profile for HIV-1 Envelope Glycoprotein Production Based on Eleven Env Trimers

(2017) Eden P. Go et al.   JOURNAL OF VIROLOGY

Mass spectrometry for protein sialoglycosylation

(2017) Qiwei Zhang et al.   MASS SPECTROMETRY REVIEWS

Evaluation and optimization of reduction and alkylation methods to maximize peptide identification with MS-based proteomics

(2017) Suttipong Suttapitugsakul et al.   Molecular BioSystems

Targeted O -glycoproteomics explored increased sialylation and identified MUC16 as a poor prognosis biomarker in advanced-stage bladder tumours

(2017) Sofia Cotton et al.   Molecular Oncology

Comparative glycoproteomics of stem cells identifies new players in ricin toxicity

(2017) Johannes Stadlmann et al.   NATURE

Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions inArabidopsis

(2017) Shou-Ling Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative investigation of human cell surface N-glycoprotein dynamics

(2017) Haopeng Xiao et al.   Chemical Science

Characterization of histone acylations links chromatin modifications with metabolism

(2017) Johayra Simithy et al.   Nature Communications

Global site-specific N-glycosylation analysis of HIV envelope glycoprotein

(2017) Liwei Cao et al.   Nature Communications

An integrated proteomic and glycoproteomic approach uncovers differences in glycosylation occupancy from benign and malignant epithelial ovarian tumors

(2017) Qing Kay Li et al.   Clinical Proteomics

Protein signatures of molecular pathways in non-small cell lung carcinoma (NSCLC): comparison of glycoproteomics and global proteomics

(2017) Shuang Yang et al.   Clinical Proteomics

High-throughput endogenous measurement of S-nitrosylation in Alzheimer's disease using oxidized cysteine-selective cPILOT

(2016) Liqing Gu et al.   ANALYST

Quantification of tunicamycin-induced protein expression and N-glycosylation changes in yeast

(2016) Haopeng Xiao et al.   ANALYST

Isotope-targeted glycoproteomics (IsoTaG) analysis of sialylated N- and O-glycopeptides on an Orbitrap Fusion Tribrid using azido and alkynyl sugars

(2016) Christina M. Woo et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Glycans and glycoproteins as specific biomarkers for cancer

(2016) Muchena J. Kailemia et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Site-Specific Quantification of Surface N-Glycoproteins in Statin-Treated Liver Cells

(2016) Haopeng Xiao et al.   ANALYTICAL CHEMISTRY

Chemical Glycoproteomics

(2016) Krishnan K. Palaniappan et al.   CHEMICAL REVIEWS

Multi-level regulation of cellular glycosylation: from genes to transcript to enzyme to structure

(2016) Sriram Neelamegham et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Glycomics and glycoproteomics of membrane proteins and cell-surface receptors: Present trends and future opportunities

(2016) Kevin Brown Chandler et al.   ELECTROPHORESIS

Recent advances in mass spectrometric analysis of glycoproteins

(2016) Alireza Banazadeh et al.   ELECTROPHORESIS

Biological roles of glycans

(2016) Ajit Varki   GLYCOBIOLOGY

Selective Exo-Enzymatic Labeling Detects Increased Cell Surface Sialoglycoprotein Expression upon Megakaryocytic Differentiation

(2016) Seok-Ho Yu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts

(2016) Junfeng Ma et al.   JOURNAL OF PROTEOME RESEARCH

Quantitative Secretome Analysis of Activated Jurkat Cells Using Click Chemistry-Based Enrichment of Secreted Glycoproteins

(2016) Kathrin E. Witzke et al.   JOURNAL OF PROTEOME RESEARCH

Quantitative Proteomic and Phosphoproteomic Comparison of 2D and 3D Colon Cancer Cell Culture Models

(2016) Xiaoshan Yue et al.   JOURNAL OF PROTEOME RESEARCH

Global Analysis of Secreted Proteins and Glycoproteins in Saccharomyces cerevisiae

(2016) Johanna M. Smeekens et al.   JOURNAL OF PROTEOME RESEARCH

HILIC and ERLIC Enrichment of Glycopeptides Derived from Breast and Brain Cancer Cells

(2016) Lauren G. Zacharias et al.   JOURNAL OF PROTEOME RESEARCH

Comprehensive quantification of N-glycoproteome in Fusarium graminearum reveals intensive glycosylation changes against fungicide

(2016) Liyan Yu et al.   Journal of Proteomics

One-Step Selective Exoenzymatic Labeling (SEEL) Strategy for the Biotinylation and Identification of Glycoproteins of Living Cells

(2016) Tiantian Sun et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Algorithms and design strategies towards automated glycoproteomics analysis

(2016) Han Hu et al.   MASS SPECTROMETRY REVIEWS

Mapping theO-Mannose Glycoproteome inSaccharomyces cerevisiae

(2016) Patrick Neubert et al.   MOLECULAR & CELLULAR PROTEOMICS

A Novel Quantitative Mass Spectrometry Platform for Determining Protein O-GlcNAcylation Dynamics

(2016) Xiaoshi Wang et al.   MOLECULAR & CELLULAR PROTEOMICS

Recent Advances in Clinical Glycoproteomics of Immunoglobulins (Igs)

(2016) Rosina Plomp et al.   MOLECULAR & CELLULAR PROTEOMICS

Human PlasmaN-glycosylation as Analyzed by Matrix-Assisted Laser Desorption/Ionization-Fourier Transform Ion Cyclotron Resonance-MS Associates with Markers of Inflammation and Metabolic Health

(2016) Karli R. Reiding et al.   MOLECULAR & CELLULAR PROTEOMICS

Mass-spectrometric exploration of proteome structure and function

(2016) Ruedi Aebersold et al.   NATURE

Loss ofO-GlcNAc glycosylation in forebrain excitatory neurons induces neurodegeneration

(2016) Andrew C. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Systematic study of the dynamics and half-lives of newly synthesized proteins in human cells

(2016) Weixuan Chen et al.   Chemical Science

Hybrid mass spectrometry approaches in glycoprotein analysis and their usage in scoring biosimilarity

(2016) Yang Yang et al.   Nature Communications

A novel mass spectrometric strategy “BEMAP” reveals Extensive O-linked protein glycosylation in Enterotoxigenic Escherichia coli

(2016) Anders Boysen et al.   Scientific Reports

Advancements in mass spectrometry-based glycoproteomics and glycomics

(2016) Haojie Lu et al.   National Science Review

Deciphering the Interplay among Multisite Phosphorylation, Interaction Dynamics, and Conformational Transitions in a Tripartite Protein System

(2016) Philip Lössl et al.   ACS Central Science

pGlyco: a pipeline for the identification of intact N-glycopeptides by using HCD- and CID-MS/MS and MS3

(2016) Wen-Feng Zeng et al.   Scientific Reports

Large-Scale Measurement of Absolute Protein Glycosylation Stoichiometry

(2015) Shisheng Sun et al.   ANALYTICAL CHEMISTRY

Over 2300 Phosphorylated Peptide Identifications with Single-Shot Capillary Zone Electrophoresis-Tandem Mass Spectrometry in a 100 min Separation

(2015) Katelyn R. Ludwig et al.   ANALYTICAL CHEMISTRY

GPQuest: A Spectral Library Matching Algorithm for Site-Specific Assignment of Tandem Mass Spectra to Intact N-glycopeptides

(2015) Shadi Toghi Eshghi et al.   ANALYTICAL CHEMISTRY

Convenient and Precise Strategy for Mapping N-Glycosylation Sites Using Microwave-Assisted Acid Hydrolysis and Characteristic Ions Recognition

(2015) Cheng Ma et al.   ANALYTICAL CHEMISTRY

Defining glycoprotein cancer biomarkers by MS in conjunction with glycoprotein enrichment

(2015) Ehwang Song et al.   Biomarkers in Medicine

Metabolic Remodeling of Cell-Surface Sialic Acids: Principles, Applications, and Recent Advances

(2015) Bo Cheng et al.   CHEMBIOCHEM

Quantitative Proteomic Analysis of Histone Modifications

(2015) He Huang et al.   CHEMICAL REVIEWS

Human plasma protein N-glycosylation

(2015) Florent Clerc et al.   GLYCOCONJUGATE JOURNAL

Large-Scale Identification of N-Glycan Glycoproteins Carrying Lewis x and Site-Specific N-Glycan Alterations in Fut9 Knockout Mice

(2015) Erika Noro et al.   JOURNAL OF PROTEOME RESEARCH

Systematic Investigation of Cellular Response and Pleiotropic Effects in Atorvastatin-Treated Liver Cells by MS-Based Proteomics

(2015) Haopeng Xiao et al.   JOURNAL OF PROTEOME RESEARCH

Comprehensive analysis of protein glycosylation by solid-phase extraction of N-linked glycans and glycosite-containing peptides

(2015) Shisheng Sun et al.   NATURE BIOTECHNOLOGY

Isotope-targeted glycoproteomics (IsoTaG): a mass-independent platform for intact N- and O-glycopeptide discovery and analysis

(2015) Christina M Woo et al.   NATURE METHODS

Sialylation: an Avenue to Target Cancer Cells

(2015) Bhairavi N. Vajaria et al.   PATHOLOGY & ONCOLOGY RESEARCH

Systematic and site-specific analysis of N-sialoglycosylated proteins on the cell surface by integrating click chemistry and MS-based proteomics

(2015) Weixuan Chen et al.   Chemical Science

A Mass Spectrometric-Derived Cell Surface Protein Atlas

(2015) Damaris Bausch-Fluck et al.   PLoS One

Quantification of Fucosylated Hemopexin and Complement Factor H in Plasma of Patients with Liver Disease

(2014) Julius Benicky et al.   ANALYTICAL CHEMISTRY

Highly Efficient Enrichment Method for Glycopeptide Analyses: Using Specific and Nonspecific Nanoparticles Synergistically

(2014) Yali Wang et al.   ANALYTICAL CHEMISTRY

Boronate Affinity Monolith with a Gold Nanoparticle-Modified Hydrophilic Polymer as a Matrix for the Highly Specific Capture of Glycoproteins

(2014) Ci Wu et al.   CHEMISTRY-A EUROPEAN JOURNAL

Cancer Metabolism and ElevatedO-GlcNAc in Oncogenic Signaling

(2014) Zhiyuan Ma et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Confident Assignment of Site-Specific Glycosylation in Complex Glycoproteins in a Single Step

(2014) Kshitij Khatri et al.   JOURNAL OF PROTEOME RESEARCH

Assignment of Saccharide Identities through Analysis of Oxonium Ion Fragmentation Profiles in LC–MS/MS of Glycopeptides

(2014) Adnan Halim et al.   JOURNAL OF PROTEOME RESEARCH

N-Glycosylation Site Analysis of Proteins from Saccharomyces cerevisiae by Using Hydrophilic Interaction Liquid Chromatography-Based Enrichment, Parallel Deglycosylation, and Mass Spectrometry

(2014) Liwei Cao et al.   JOURNAL OF PROTEOME RESEARCH

Label-Free Glycopeptide Quantification for Biomarker Discovery in Human Sera

(2014) Anoop Mayampurath et al.   JOURNAL OF PROTEOME RESEARCH

Protein and Site Specificity of Fucosylation in Liver-Secreted Glycoproteins

(2014) Petr Pompach et al.   JOURNAL OF PROTEOME RESEARCH

Comprehensive Analysis of Protein N-Glycosylation Sites by Combining Chemical Deglycosylation with LC–MS

(2014) Weixuan Chen et al.   JOURNAL OF PROTEOME RESEARCH

Glycopeptide Enrichment Using a Combination of ZIC-HILIC and Cotton Wool for Exploring the Glycoproteome of Wheat Flour Albumins

(2014) Plaipol Dedvisitsakul et al.   JOURNAL OF PROTEOME RESEARCH

LC–MS/MS Quantitation of Esophagus Disease Blood Serum Glycoproteins by Enrichment with Hydrazide Chemistry and Lectin Affinity Chromatography

(2014) Ehwang Song et al.   JOURNAL OF PROTEOME RESEARCH

Changes in Metabolic Chemical Reporter Structure Yield a Selective Probe of O-GlcNAc Modification

(2014) Kelly N. Chuh et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

A Tandem Enzymatic Approach for Detecting and Imaging Tumor-Associated Thomsen–Friedenreich Antigen Disaccharide

(2014) Qian Li et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Mass Spectrometric Analysis of the Cell Surface N-Glycoproteome by Combining Metabolic Labeling and Click Chemistry

(2014) Johanna M. Smeekens et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Quantitative mass spectrometric analysis of glycoproteins combined with enrichment methods

(2014) Yeong Hee Ahn et al.   MASS SPECTROMETRY REVIEWS

A Universal Chemical Enrichment Method for Mapping the YeastN-glycoproteome by Mass Spectrometry (MS)

(2014) Weixuan Chen et al.   MOLECULAR & CELLULAR PROTEOMICS

Glycoproteomic Analysis of Prostate Cancer Tissues by SWATH Mass Spectrometry Discovers N-acylethanolamine Acid Amidase and Protein Tyrosine Kinase 7 as Signatures for Tumor Aggressiveness

(2014) Yansheng Liu et al.   MOLECULAR & CELLULAR PROTEOMICS

A Human Pluripotent Stem Cell Surface N-Glycoproteome Resource Reveals Markers, Extracellular Epitopes, and Drug Targets

(2014) Kenneth R. Boheler et al.   Stem Cell Reports

On-plate glycoproteins/glycopeptides selective enrichment and purification based on surface pattern for direct MALDI MS analysis

(2013) Zhoufang Zeng et al.   ANALYST

Boronic acid-functionalized detonation nanodiamond for specific enrichment of glycopeptides in glycoproteome analysis

(2013) Guobin Xu et al.   ANALYST

Modulation of Glycan Detection on Specific Glycoproteins by Lectin Multimerization

(2013) Zheng Cao et al.   ANALYTICAL CHEMISTRY

Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology

(2013) Catharina Steentoft et al.   EMBO JOURNAL

Large-scale global identification of protein lysine methylation in vivo

(2013) Xing-Jun Cao et al.   Epigenetics

Deglycosylation systematically improves N-glycoprotein identification in liquid chromatography–tandem mass spectrometry proteomics for analysis of cell wall stress responses in Saccharomyces cerevisiae lacking Alg3p

(2013) Ulla-Maja Bailey et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Quantitative mapping of glycoprotein micro-heterogeneity and macro-heterogeneity: an evaluation of mass spectrometry signal strengths using synthetic peptides and glycopeptides

(2013) Kathrin Stavenhagen et al.   JOURNAL OF MASS SPECTROMETRY

Unambiguous Phosphosite Localization using Electron-Transfer/Higher-Energy Collision Dissociation (EThcD)

(2013) Christian K. Frese et al.   JOURNAL OF PROTEOME RESEARCH

Glycoproteomic Discovery of Serological Biomarker Candidates for HCV/HBV Infection-Associated Liver Fibrosis and Hepatocellular Carcinoma

(2013) Hiroyuki Kaji et al.   JOURNAL OF PROTEOME RESEARCH

Proteome Wide Purification and Identification of O-GlcNAc-Modified Proteins Using Click Chemistry and Mass Spectrometry

(2013) Hannes Hahne et al.   JOURNAL OF PROTEOME RESEARCH

Site-Specific Glycan-Peptide Analysis for Determination of N-Glycoproteome Heterogeneity

(2013) Benjamin L. Parker et al.   JOURNAL OF PROTEOME RESEARCH

Sweet-Heart — An integrated suite of enabling computational tools for automated MS2/MS3 sequencing and identification of glycopeptides

(2013) Sz-Wei Wu et al.   Journal of Proteomics

Bifunctional Unnatural Sialic Acids for Dual Metabolic Labeling of Cell-Surface Sialylated Glycans

(2013) Lianshun Feng et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Mass spectrometry and redox proteomics: Applications in disease

(2013) D. Allan Butterfield et al.   MASS SPECTROMETRY REVIEWS

Integrated Glycoproteomics Demonstrates Fucosylated Serum Paraoxonase 1 Alterations in Small Cell Lung Cancer

(2013) Jung-Mo Ahn et al.   MOLECULAR & CELLULAR PROTEOMICS

Identification ofO-LinkedN-Acetylglucosamine (O-GlcNAc)-modified Osteoblast Proteins by Electron Transfer Dissociation Tandem Mass Spectrometry Reveals Proteins Critical for Bone Formation

(2013) Alexis K. Nagel et al.   MOLECULAR & CELLULAR PROTEOMICS

Enhanced Mass Spectrometric Mapping of the Human GalNAc-typeO-Glycoproteome with SimpleCells

(2013) Sergey Y. Vakhrushev et al.   MOLECULAR & CELLULAR PROTEOMICS

A Comparative Study of Lectin Affinity Based PlantN-Glycoproteome Profiling Using Tomato Fruit as a Model

(2013) Eliel Ruiz-May et al.   MOLECULAR & CELLULAR PROTEOMICS

Glycoproteomic Analysis of the Secretome of Human Endothelial Cells

(2013) Xiaoke Yin et al.   MOLECULAR & CELLULAR PROTEOMICS

Rebuilding cancer metastasis in the mouse

(2013) Meera Saxena et al.   Molecular Oncology

Adaptive immune activation: glycosylation does matter

(2013) Margreet A Wolfert et al.   Nature Chemical Biology

Integrated proteomic analysis of post-translational modifications by serial enrichment

(2013) Philipp Mertins et al.   NATURE METHODS

Magnetic nanoparticles with dendrimer-assisted boronate avidity for the selective enrichment of trace glycoproteins

(2013) Heye Wang et al.   Chemical Science

In-Gel Nonspecific Proteolysis for Elucidating Glycoproteins: A Method for Targeted Protein-Specific Glycosylation Analysis in Complex Protein Mixtures

(2012) Charles C. Nwosu et al.   ANALYTICAL CHEMISTRY

Toward Full Peptide Sequence Coverage by Dual Fragmentation Combining Electron-Transfer and Higher-Energy Collision Dissociation Tandem Mass Spectrometry

(2012) Christian K. Frese et al.   ANALYTICAL CHEMISTRY

Analytical glycobiology at high sensitivity: current approaches and directions

(2012) Milos V. Novotny et al.   GLYCOCONJUGATE JOURNAL

Boronic acid modified magnetic nanoparticles for enrichment of glycoproteins via azide and alkyne click chemistry

(2012) Xihao Zhang et al.   JOURNAL OF MATERIALS CHEMISTRY

Chemical Deamidation: A Common Pitfall in Large-Scale N-Linked Glycoproteomic Mass Spectrometry-Based Analyses

(2012) Giuseppe Palmisano et al.   JOURNAL OF PROTEOME RESEARCH

LC–MS/MS Characterization of O-Glycosylation Sites and Glycan Structures of Human Cerebrospinal Fluid Glycoproteins

(2012) Adnan Halim et al.   JOURNAL OF PROTEOME RESEARCH

Development of a Novel Method for Analyzing CollagenO-glycosylations by Hydrazide Chemistry

(2012) Yuki Taga et al.   MOLECULAR & CELLULAR PROTEOMICS

Mapping ofO-GlcNAc Sites of 20 S Proteasome Subunits and Hsp90 by a Novel Biotin-Cystamine Tag

(2012) Thorsten Overath et al.   MOLECULAR & CELLULAR PROTEOMICS

A Novel Method for the Simultaneous Enrichment, Identification, and Quantification of Phosphopeptides and Sialylated Glycopeptides Applied to a Temporal Profile of Mouse Brain Development

(2012) Giuseppe Palmisano et al.   MOLECULAR & CELLULAR PROTEOMICS

Large-scale quantitative glycoproteomics analysis of site-specific glycosylation occupancy

(2012) Sheng Pan et al.   Molecular BioSystems

Mapping N-Glycosylation Sites across Seven Evolutionarily Distant Species Reveals a Divergent Substrate Proteome Despite a Common Core Machinery

(2012) Dorota F. Zielinska et al.   MOLECULAR CELL

Vertebrate protein glycosylation: diversity, synthesis and function

(2012) Kelley W. Moremen et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Tandem mass spectrometry identifies many mouse brain O-GlcNAcylated proteins including EGF domain-specific O-GlcNAc transferase targets

(2012) J. F. Alfaro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analytical technologies for identification and characterization of the plant N-glycoproteome

(2012) Eliel Ruiz-May et al.   Frontiers in Plant Science

Isotopic Signature Transfer and Mass Pattern Prediction (IsoStamp): An Enabling Technique for Chemically-Directed Proteomics

(2011) Krishnan K. Palaniappan et al.   ACS Chemical Biology

Cell surface glycoproteomic analysis of prostate cancer-derived PC-3 cells

(2011) Sarah C. Hubbard et al.   BIOORGANIC & MEDICINAL CHEMISTRY LETTERS

Simultaneous and Extensive Site-specific N- and O-Glycosylation Analysis in Protein Mixtures

(2011) Charles C. Nwosu et al.   JOURNAL OF PROTEOME RESEARCH

Mapping N-Linked Glycosylation Sites in the Secretome and Whole Cells of Aspergillus niger Using Hydrazide Chemistry and Mass Spectrometry

(2011) Lu Wang et al.   JOURNAL OF PROTEOME RESEARCH

Comprehensive Description of the N-Glycoproteome of Mouse Pancreatic β-Cells and Human Islets

(2011) Carsten Danzer et al.   JOURNAL OF PROTEOME RESEARCH

N-glycoproteomics in plants: Perspectives and challenges

(2011) Wei Song et al.   Journal of Proteomics

Detection, Evaluation and Minimization of Nonenzymatic Deamidation in Proteomic Sample Preparation

(2011) Piliang Hao et al.   MOLECULAR & CELLULAR PROTEOMICS

Correct Interpretation of Comprehensive Phosphorylation Dynamics Requires Normalization by Protein Expression Changes

(2011) Ronghu Wu et al.   MOLECULAR & CELLULAR PROTEOMICS

Human Urinary Glycoproteomics; Attachment Site Specific Analysis ofN- andO-Linked Glycosylations by CID and ECD

(2011) Adnan Halim et al.   MOLECULAR & CELLULAR PROTEOMICS

Targeted Identification of Metastasis-associated Cell-surface Sialoglycoproteins in Prostate Cancer

(2011) Lifang Yang et al.   MOLECULAR & CELLULAR PROTEOMICS

Mapping intact protein isoforms in discovery mode using top-down proteomics

(2011) John C. Tran et al.   NATURE

Mining the O-glycoproteome using zinc-finger nuclease–glycoengineered SimpleCell lines

(2011) Catharina Steentoft et al.   NATURE METHODS

A large-scale method to measure absolute protein phosphorylation stoichiometries

(2011) Ronghu Wu et al.   NATURE METHODS

Cancer genetics-guided discovery of serum biomarker signatures for diagnosis and prognosis of prostate cancer

(2011) I. Cima et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential profiling studies of N-linked glycoproteins in glioblastoma cancer stem cells upon treatment with γ-secretase inhibitor

(2011) Lan Dai et al.   PROTEOMICS

Towards characterization of the glycoproteome of tomato (Solanum lycopersicum) fruit using Concanavalin A lectin affinity chromatography and LC-MALDI-MS/MS analysis

(2011) Carmen Catalá et al.   PROTEOMICS

Human Alzheimer’s disease synaptic O-GlcNAc site mapping and iTRAQ expression proteomics with ion trap mass spectrometry

(2010) Yuliya V. Skorobogatko et al.   AMINO ACIDS

Online coupling of reverse-phase and hydrophilic interaction liquid chromatography for protein and glycoprotein characterization

(2010) Maggie P. Y. Lam et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Chemical and enzymatic N-glycan release comparison for N-glycan profiling of monoclonal antibodies expressed in plants

(2010) Ada Triguero et al.   ANALYTICAL BIOCHEMISTRY

Characterization of Murine Brain Membrane Glycoproteins by Detergent Assisted Lectin Affinity Chromatography

(2010) Xin Wei et al.   ANALYTICAL CHEMISTRY

Utilizing Ion-Pairing Hydrophilic Interaction Chromatography Solid Phase Extraction for Efficient Glycopeptide Enrichment in Glycoproteomics

(2010) Simon Mysling et al.   ANALYTICAL CHEMISTRY

Precision Mapping of an In Vivo N-Glycoproteome Reveals Rigid Topological and Sequence Constraints

(2010) Dorota F. Zielinska et al.   CELL

Mapping Tissue-Specific Expression of Extracellular Proteins Using Systematic Glycoproteomic Analysis of Different Mouse Tissues

(2010) Yuan Tian et al.   JOURNAL OF PROTEOME RESEARCH

Assigning N-Glycosylation Sites of Glycoproteins Using LC/MSMS in Conjunction with Endo-M/Exoglycosidase Mixture

(2010) Zaneer M. Segu et al.   JOURNAL OF PROTEOME RESEARCH

Enrichment of O-GlcNAc Modified Proteins by the Periodate Oxidation−Hydrazide Resin Capture Approach

(2010) Eva Klement et al.   JOURNAL OF PROTEOME RESEARCH

Modification-specific proteomics in plant biology

(2010) A. Jimmy Ytterberg et al.   Journal of Proteomics

Glycoprotein analysis using protein microarrays and mass spectrometry

(2010) Tasneem Patwa et al.   MASS SPECTROMETRY REVIEWS

Mass Spectrometry Based Glycoproteomics—From a Proteomics Perspective

(2010) Sheng Pan et al.   MOLECULAR & CELLULAR PROTEOMICS

Sialic Acid-focused Quantitative Mouse Serum Glycoproteomics by Multiple Reaction Monitoring Assay

(2010) Masaki Kurogochi et al.   MOLECULAR & CELLULAR PROTEOMICS

Liver Membrane Proteome Glycosylation Changes in Mice Bearing an Extra-hepatic Tumor

(2010) Albert Lee et al.   MOLECULAR & CELLULAR PROTEOMICS

Simultaneous Characterization of Glyco- and Phosphoproteomes of Mouse Brain Membrane Proteome with Electrostatic Repulsion Hydrophilic Interaction Chromatography

(2010) Huoming Zhang et al.   MOLECULAR & CELLULAR PROTEOMICS

Simultaneous Glycan-Peptide Characterization Using Hydrophilic Interaction Chromatography and Parallel Fragmentation by CID, Higher Energy Collisional Dissociation, and Electron Transfer Dissociation MS Applied to theN-Linked Glycoproteome ofCampylobacter jejuni

(2010) Nichollas E. Scott et al.   MOLECULAR & CELLULAR PROTEOMICS

Combining various strategies to increase the coverage of the plant cell wall glycoproteome

(2010) Yu Zhang et al.   PHYTOCHEMISTRY

Targeted metabolic labeling of yeast N-glycans with unnatural sugars

(2010) M. A. Breidenbach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative proteomics approach for identifying protein-drug interactions in complex mixtures using protein stability measurements

(2010) G. M. West et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Glycoproteomics and clinical applications

(2010) Yuan Tian et al.   Proteomics Clinical Applications

Quantitative site-specific analysis of protein glycosylation by LC-MS using different glycopeptide-enrichment strategies

(2009) Jessica Wohlgemuth et al.   ANALYTICAL BIOCHEMISTRY

Analysis and Optimization of Copper-Catalyzed Azide–Alkyne Cycloaddition for Bioconjugation

(2009) Vu Hong et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Boronic Acid Functionalized Core-Satellite Composite Nanoparticles for Advanced Enrichment of Glycopeptides and Glycoproteins

(2009) Lijuan Zhang et al.   CHEMISTRY-A EUROPEAN JOURNAL

Determination of glycosylation sites and site-specific heterogeneity in glycoproteins

(2009) Hyun Joo An et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Mass Spectrometry (LC-MS/MS) Site-Mapping of N-Glycosylated Membrane Proteins for Breast Cancer Biomarkers

(2009) Stephen A. Whelan et al.   JOURNAL OF PROTEOME RESEARCH

Glycoproteomic Analysis of Embryonic Stem Cells: Identification of Potential Glycobiomarkers Using Lectin Affinity Chromatography of Glycopeptides†

(2009) Gerardo Alvarez-Manilla et al.   JOURNAL OF PROTEOME RESEARCH

Affinity Enrichment and Characterization of Mucin Core-1 Type Glycopeptides from Bovine Serum

(2009) Zsuzsanna Darula et al.   MOLECULAR & CELLULAR PROTEOMICS

Identification and Quantification of Glycoproteins Using Ion-Pairing Normal-phase Liquid Chromatography and Mass Spectrometry

(2009) Wen Ding et al.   MOLECULAR & CELLULAR PROTEOMICS

Enrichment and Site Mapping ofO-LinkedN-Acetylglucosamine by a Combination of Chemical/Enzymatic Tagging, Photochemical Cleavage, and Electron Transfer Dissociation Mass Spectrometry

(2009) Zihao Wang et al.   MOLECULAR & CELLULAR PROTEOMICS

Plant Cell Wall Proteomics: Mass Spectrometry Data, a Trove for Research on Protein Structure/Function Relationships

(2009) Cécile Albenne et al.   Molecular Plant

Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins

(2009) Bernd Wollscheid et al.   NATURE BIOTECHNOLOGY

Enrichment of glycopeptides for glycan structure and attachment site identification

(2009) Jonas Nilsson et al.   NATURE METHODS

Membrane-Associated, Boron-Interacting Proteins Isolated by Boronate Affinity Chromatography

(2009) M. A. Wimmer et al.   PLANT AND CELL PHYSIOLOGY

Chemical de-O-glycosylation of glycoproteins for application in LC-based proteomics

(2009) Franz-Georg Hanisch et al.   PROTEOMICS

Understanding the Warburg Effect: The Metabolic Requirements of Cell Proliferation

(2009) M. G. Vander Heiden et al.   SCIENCE

A strategy to reveal potential glycan markers from serum glycoproteins associated with breast cancer progression

(2008) U. M Abd Hamid et al.   GLYCOBIOLOGY

Recent insights into the biological roles of mucin-type O-glycosylation

(2008) E Tian et al.   GLYCOCONJUGATE JOURNAL

Plasma Glycoprotein Profiling for Colorectal Cancer Biomarker Identification by Lectin Glycoarray and Lectin Blot

(2008) Yinghua Qiu et al.   JOURNAL OF PROTEOME RESEARCH

Assessment of lectin and HILIC based enrichment protocols for characterization of serum glycoproteins by mass spectrometry

(2008) Cosima D. Calvano et al.   Journal of Proteomics

Analysis of Glycosylation Site Occupancy Reveals a Role for Ost3p and Ost6p in Site-specificN-Glycosylation Efficiency

(2008) Benjamin L. Schulz et al.   MOLECULAR & CELLULAR PROTEOMICS

Identification of Structural and FunctionalO-LinkedN-Acetylglucosamine-bearing Proteins inXenopus laevisOocyte

(2008) Vanessa Dehennaut et al.   MOLECULAR & CELLULAR PROTEOMICS

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY