Benchmarking common quantification strategies for large-scale phosphoproteomics
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Benchmarking common quantification strategies for large-scale phosphoproteomics
Authors
Keywords
-
Journal
Nature Communications
Volume 9, Issue 1, Pages -
Publisher
Springer Nature
Online
2018-03-07
DOI
10.1038/s41467-018-03309-6
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Deep Coverage of Global Protein Expression and Phosphorylation in Breast Tumor Cell Lines Using TMT 10-plex Isobaric Labeling
- (2017) Fang-Ke Huang et al. JOURNAL OF PROTEOME RESEARCH
- Performance Evaluation of the Q Exactive HF-X for Shotgun Proteomics
- (2017) Christian D. Kelstrup et al. JOURNAL OF PROTEOME RESEARCH
- An Optimized Shotgun Strategy for the Rapid Generation of Comprehensive Human Proteomes
- (2017) Dorte B. Bekker-Jensen et al. Cell Systems
- Improvement of Quantitative Measurements in Multiplex Proteomics Using High-Field Asymmetric Waveform Spectrometry
- (2016) Sibylle Pfammatter et al. JOURNAL OF PROTEOME RESEARCH
- On the Statistical Significance of Compressed Ratios in Isobaric Labeling: A Cross-Platform Comparison
- (2016) Ana Martinez-Val et al. JOURNAL OF PROTEOME RESEARCH
- Proteogenomics connects somatic mutations to signalling in breast cancer
- (2016) Philipp Mertins et al. NATURE
- The Perseus computational platform for comprehensive analysis of (prote)omics data
- (2016) Stefka Tyanova et al. NATURE METHODS
- High-performance hybrid Orbitrap mass spectrometers for quantitative proteome analysis: Observations and implications
- (2016) James C. Williamson et al. PROTEOMICS
- Uses and misuses of the fudge factor in quantitative discovery proteomics
- (2016) Quentin Giai Gianetto et al. PROTEOMICS
- Evaluating Multiplexed Quantitative Phosphopeptide Analysis on a Hybrid Quadrupole Mass Filter/Linear Ion Trap/Orbitrap Mass Spectrometer
- (2015) Brian K. Erickson et al. ANALYTICAL CHEMISTRY
- 2016 update of the PRIDE database and its related tools
- (2015) Juan Antonio Vizcaíno et al. NUCLEIC ACIDS RESEARCH
- MultiNotch MS3 Enables Accurate, Sensitive, and Multiplexed Detection of Differential Expression across Cancer Cell Line Proteomes
- (2014) Graeme C. McAlister et al. ANALYTICAL CHEMISTRY
- Ion Coalescence of Neutron Encoded TMT 10-Plex Reporter Ions
- (2014) Thilo Werner et al. ANALYTICAL CHEMISTRY
- Rapid and Deep Proteomes by Faster Sequencing on a Benchtop Quadrupole Ultra-High-Field Orbitrap Mass Spectrometer
- (2014) Christian D. Kelstrup et al. JOURNAL OF PROTEOME RESEARCH
- Comparing SILAC- and Stable Isotope Dimethyl-Labeling Approaches for Quantitative Proteomics
- (2014) Ho-Tak Lau et al. JOURNAL OF PROTEOME RESEARCH
- Off-Line High-pH Reversed-Phase Fractionation for In-Depth Phosphoproteomics
- (2014) Tanveer S. Batth et al. JOURNAL OF PROTEOME RESEARCH
- Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ
- (2014) Jürgen Cox et al. MOLECULAR & CELLULAR PROTEOMICS
- ProteomeXchange provides globally coordinated proteomics data submission and dissemination
- (2014) Juan A Vizcaíno et al. NATURE BIOTECHNOLOGY
- Novel Parallelized Quadrupole/Linear Ion Trap/Orbitrap Tribrid Mass Spectrometer Improving Proteome Coverage and Peptide Identification Rates
- (2013) Michael W. Senko et al. ANALYTICAL CHEMISTRY
- Measuring and Managing Ratio Compression for Accurate iTRAQ/TMT Quantification
- (2013) Mikhail M. Savitski et al. JOURNAL OF PROTEOME RESEARCH
- In Vivo Phosphoproteomics Analysis Reveals the Cardiac Targets of -Adrenergic Receptor Signaling
- (2013) A. Lundby et al. Science Signaling
- Accurate Multiplexed Proteomics at the MS2 Level Using the Complement Reporter Ion Cluster
- (2012) Martin Wühr et al. ANALYTICAL CHEMISTRY
- Optimized Fast and Sensitive Acquisition Methods for Shotgun Proteomics on a Quadrupole Orbitrap Mass Spectrometer
- (2012) Christian D. Kelstrup et al. JOURNAL OF PROTEOME RESEARCH
- Benchmarking stable isotope labeling based quantitative proteomics
- (2012) A.F. Maarten Altelaar et al. Journal of Proteomics
- Proteomic Investigations Reveal a Role for RNA Processing Factor THRAP3 in the DNA Damage Response
- (2012) Petra Beli et al. MOLECULAR CELL
- Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues
- (2012) Alicia Lundby et al. Nature Communications
- Systematic Comparison of Label-Free, Metabolic Labeling, and Isobaric Chemical Labeling for Quantitative Proteomics on LTQ Orbitrap Velos
- (2011) Zhou Li et al. JOURNAL OF PROTEOME RESEARCH
- Mass Spectrometry-based Proteomics Using Q Exactive, a High-performance Benchtop Quadrupole Orbitrap Mass Spectrometer
- (2011) Annette Michalski et al. MOLECULAR & CELLULAR PROTEOMICS
- iTRAQ Labeling is Superior to mTRAQ for Quantitative Global Proteomics and Phosphoproteomics
- (2011) Philipp Mertins et al. MOLECULAR & CELLULAR PROTEOMICS
- Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging
- (2011) Craig D Wenger et al. NATURE METHODS
- A large-scale method to measure absolute protein phosphorylation stoichiometries
- (2011) Ronghu Wu et al. NATURE METHODS
- MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics
- (2011) Lily Ting et al. NATURE METHODS
- Peptide Labeling with Isobaric Tags Yields Higher Identification Rates Using iTRAQ 4-Plex Compared to TMT 6-Plex and iTRAQ 8-Plex on LTQ Orbitrap
- (2010) Peter Pichler et al. ANALYTICAL CHEMISTRY
- A Tissue-Specific Atlas of Mouse Protein Phosphorylation and Expression
- (2010) Edward L. Huttlin et al. CELL
- Addressing Accuracy and Precision Issues in iTRAQ Quantitation
- (2010) Natasha A. Karp et al. MOLECULAR & CELLULAR PROTEOMICS
- Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis
- (2010) J. V. Olsen et al. Science Signaling
- iTRAQ Underestimation in Simple and Complex Mixtures: “The Good, the Bad and the Ugly”
- (2009) Saw Yen Ow et al. JOURNAL OF PROTEOME RESEARCH
- Improved visualization of protein consensus sequences by iceLogo
- (2009) Niklaas Colaert et al. NATURE METHODS
- MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
- (2008) Jürgen Cox et al. NATURE BIOTECHNOLOGY
- The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry
- (2008) Judit Villén et al. Nature Protocols
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now