Sexually dimorphic gene expression and transcriptome evolution provide mixed evidence for a fast-Z effect in Heliconius

Patterns of Z chromosome divergence among Heliconius species highlight the importance of historical demography

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Evolution of Sex Chromosome Dosage Compensation in Animals: A Beautiful Theory, Undermined by Facts and Bedeviled by Details

(2017) Luiqi Gu et al.   Genome Biology and Evolution

Mating Changes Sexually Dimorphic Gene Expression in the Seed Beetle Callosobruchus maculatus

(2017) Elina Immonen et al.   Genome Biology and Evolution

Global Dosage Compensation Is Ubiquitous in Lepidoptera, but Counteracted by the Masculinization of the Z Chromosome

(2017) Ann Kathrin Huylmans et al.   MOLECULAR BIOLOGY AND EVOLUTION

The transcriptional architecture of phenotypic dimorphism

(2017) Judith E. Mank   Nature Ecology & Evolution

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(2016) Sonja Grath et al.   Annual Review of Genetics

Genome-wide analysis of ionotropic receptors provides insight into their evolution in Heliconius butterflies

(2016) Bas van Schooten et al.   BMC GENOMICS

The evolution of sperm competition genes: The effect of mating system on levels of genetic variation within and between species

(2016) Amy L. Dapper et al.   EVOLUTION

Natural Selection and Genetic Diversity in the Butterfly Heliconius melpomene

(2016) Simon H. Martin et al.   GENETICS

Hemizygosity Enhances Purifying Selection: Lack of Fast-Z Evolution in Two Satyrine Butterflies

(2016) Marjolaine Rousselle et al.   Genome Biology and Evolution

The transcriptome response ofHeliconius melpomenelarvae to a novel host plant

(2016) Quan-You Yu et al.   MOLECULAR ECOLOGY

Major Improvements to the Heliconius melpomene Genome Assembly Used to Confirm 10 Chromosome Fusion Events in 6 Million Years of Butterfly Evolution

(2016) John W. Davey et al.   G3-Genes Genomes Genetics

Adaptive Protein Evolution in Animals and the Effective Population Size Hypothesis

(2016) Nicolas Galtier   PLoS Genetics

Natural Selection and Genetic Diversity in the Butterfly Heliconius melpomene

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BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS: Table 1.

(2015) Katharina J. Hoff et al.   BIOINFORMATICS

The effects of sex-biased gene expression and X-linkage on rates of adaptive protein sequence evolution in Drosophila

(2015) V. Avila et al.   Biology Letters

Conservation of Regional Variation in Sex-Specific Sex Chromosome Regulation

(2015) Alison E. Wright et al.   GENETICS

Sex Chromosome Dosage Compensation inHeliconiusButterflies: Global yet Still Incomplete?

(2015) James R. Walters et al.   Genome Biology and Evolution

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Multilocus Species Trees Show the Recent Adaptive Radiation of the Mimetic Heliconius Butterflies

(2015) Krzysztof M. Kozak et al.   SYSTEMATIC BIOLOGY

Diversity of Mycobacterium tuberculosis across Evolutionary Scales

(2015) Mary B. O’Neill et al.   PLoS Pathogens

Conservation of Regional Variation in Sex-Specific Sex Chromosome Regulation

(2015) Alison E. Wright et al.   GENETICS

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Faster-X Effects in Two Drosophila Lineages

(2014) Victoria Ávila et al.   Genome Biology and Evolution

Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm

(2014) Alexandre Lomsadze et al.   NUCLEIC ACIDS RESEARCH

Reduced selection and accumulation of deleterious mutations in genes exclusively expressed in men

(2014) Moran Gershoni et al.   Nature Communications

Frequent adaptation and the McDonald-Kreitman test

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The faster-X effect: integrating theory and data

(2013) Richard P. Meisel et al.   TRENDS IN GENETICS

Female Behaviour Drives Expression and Evolution of Gustatory Receptors in Butterflies

(2013) Adriana D. Briscoe et al.   PLoS Genetics

EggLib: processing, analysis and simulation tools for population genetics and genomics

(2012) Stéphane De Mita et al.   BMC GENETICS

The Role of Background Selection in Shaping Patterns of Molecular Evolution and Variation: Evidence from Variability on the Drosophila X Chromosome

(2012) B. Charlesworth   GENETICS

Sex-Biased Transcriptome Evolution in Drosophila

(2012) Raquel Assis et al.   Genome Biology and Evolution

A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence

(2012) T. T. Hu et al.   GENOME RESEARCH

Evidence for Widespread Positive and Purifying Selection Across the European Rabbit (Oryctolagus cuniculus) Genome

(2012) M. Carneiro et al.   MOLECULAR BIOLOGY AND EVOLUTION

Impact of Genetic Architecture on the Relative Rates of X versus Autosomal Adaptive Substitution

(2012) T. Connallon et al.   MOLECULAR BIOLOGY AND EVOLUTION

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

(2012) Kanchon K. Dasmahapatra et al.   NATURE

The Drosophila melanogaster Genetic Reference Panel

(2012) Trudy F. C. Mackay et al.   NATURE

Sex-Specific Adaptation Drives Early Sex Chromosome Evolution in Drosophila

(2012) Q. Zhou et al.   SCIENCE

Faster-X Evolution of Gene Expression in Drosophila

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MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons

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Weighing the evidence for adaptation at the molecular level

(2011) Justin C. Fay   TRENDS IN GENETICS

The population genetics of beneficial mutations

(2010) H. A. Orr   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

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Fast and accurate short read alignment with Burrows-Wheeler transform

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EFFECTIVE POPULATION SIZE AND THE FASTER-X EFFECT: AN EXTENDED MODEL

(2009) Beatriz Vicoso et al.   EVOLUTION

EFFECTIVE POPULATION SIZE AND THE FASTER-X EFFECT: EMPIRICAL RESULTS AND THEIR INTERPRETATION

(2009) Judith E. Mank et al.   EVOLUTION

Faster-Z Evolution Is Predominantly Due to Genetic Drift

(2009) J. E. Mank et al.   MOLECULAR BIOLOGY AND EVOLUTION

Estimating the Rate of Adaptive Molecular Evolution in the Presence of Slightly Deleterious Mutations and Population Size Change

(2009) A. Eyre-Walker et al.   MOLECULAR BIOLOGY AND EVOLUTION

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

(2008) Mario Stanke et al.   BIOINFORMATICS

Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs

(2008) Julien Dutheil et al.   BMC EVOLUTIONARY BIOLOGY

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(2008) Ali Mortazavi et al.   NATURE METHODS