Analytical Methods for Detection of Plant Metabolomes Changes in Response to Biotic and Abiotic Stresses

Plant–Pathogen Warfare under Changing Climate Conditions

(2018) André C. Velásquez et al.   CURRENT BIOLOGY

Fundamentals of ion mobility spectrometry

(2018) Valérie Gabelica et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

High-mass-resolution MALDI mass spectrometry imaging reveals detailed spatial distribution of metabolites and lipids in roots of barley seedlings in response to salinity stress

(2018) Lenin D. Sarabia et al.   Metabolomics

MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis

(2018) Jasmine Chong et al.   NUCLEIC ACIDS RESEARCH

Metabolome Integrated Analysis of High-Temperature Response in Pinus radiata

(2018) Mónica Escandón et al.   Frontiers in Plant Science

Plant Life in Extreme Environments: How Do You Improve Drought Tolerance?

(2018) Ulrike Bechtold   Frontiers in Plant Science

Identifying anti-HSV compounds from unrelated plants using NMR and LC–MS metabolomic analysis

(2018) Gerhard Prinsloo et al.   Metabolomics

Missing Value Imputation Approach for Mass Spectrometry-based Metabolomics Data

(2018) Runmin Wei et al.   Scientific Reports

Link between carrot leaf secondary metabolites and resistance to Alternaria dauci

(2018) Claude Koutouan et al.   Scientific Reports

Combinations of Abiotic Factors Differentially Alter Production of Plant Secondary Metabolites in Five Woody Plant Species in the Boreal-Temperate Transition Zone

(2018) John L. Berini et al.   Frontiers in Plant Science

Functional Metabolomics—A Useful Tool to Characterize Stress-Induced Metabolome Alterations Opening New Avenues towards Tailoring Food Crop Quality

(2018) Corinna Dawid et al.   Agronomy-Basel

Pattern Recognition Receptors—Versatile Genetic Tools for Engineering Broad-Spectrum Disease Resistance in Crops

(2018) Stefanie Ranf   Agronomy-Basel

Contribution of Untargeted Metabolomics for Future Assessment of Biotech Crops

(2018) Bastien Christ et al.   TRENDS IN PLANT SCIENCE

Distinctive Patterns of Flavonoid Biosynthesis in Roots and Nodules of Datisca glomerata and Medicago spp. Revealed by Metabolomic and Gene Expression Profiles

(2018) Isaac Gifford et al.   Frontiers in Plant Science

OpenMS – A platform for reproducible analysis of mass spectrometry data

(2017) Julianus Pfeuffer et al.   JOURNAL OF BIOTECHNOLOGY

Drought-related secondary metabolites of barley (Hordeum vulgareL.) leaves and their metabolomic quantitative trait loci

(2017) Anna Piasecka et al.   PLANT JOURNAL

Development of an efficient glucosinolate extraction method

(2017) T. Doheny-Adams et al.   Plant Methods

Structure annotation and quantification of wheat seed oxidized lipids by high resolution LC-MS/MS

(2017) David Riewe et al.   PLANT PHYSIOLOGY

Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative Exploration

(2017) Kwanjeera Wanichthanarak et al.   PLoS One

Cowpea (Vigna unguiculata L. Walp.) Metabolomics: Osmoprotection as a Physiological Strategy for Drought Stress Resistance and Improved Yield

(2017) Piebiep Goufo et al.   Frontiers in Plant Science

Metabolomics for Plant Improvement: Status and Prospects

(2017) Rakesh Kumar et al.   Frontiers in Plant Science

Crop Production under Drought and Heat Stress: Plant Responses and Management Options

(2017) Shah Fahad et al.   Frontiers in Plant Science

Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis

(2017) Po-chih Shen et al.   Botanical Studies

From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

(2017) Leonardo Perez de Souza et al.   GigaScience

Ash leaf metabolomes reveal differences between trees tolerant and susceptible to ash dieback disease

(2017) Christine M. Sambles et al.   Scientific Data

Hydrogen Rearrangement Rules: Computational MS/MS Fragmentation and Structure Elucidation Using MS-FINDER Software

(2016) Hiroshi Tsugawa et al.   ANALYTICAL CHEMISTRY

Plant Metabolomics: An Indispensable System Biology Tool for Plant Science

(2016) Jun Hong et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Fortune telling: metabolic markers of plant performance

(2016) Olivier Fernandez et al.   Metabolomics

Differential metabolomic responses of PAMP-triggered immunity and effector-triggered immunity in Arabidopsis suspension cells

(2016) Biswapriya B. Misra et al.   Metabolomics

Structural Characterization of Flavonoid Glycoconjugates and Their Derivatives with Mass Spectrometric Techniques

(2016) Piotr Kachlicki et al.   MOLECULES

Data analysis strategies for targeted and untargeted LC-MS metabolomic studies: Overview and workflow

(2016) Eva Gorrochategui et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

MetFrag relaunched: incorporating strategies beyond in silico fragmentation

(2016) Christoph Ruttkies et al.   Journal of Cheminformatics

Profiling of Altered Metabolomic States in Nicotiana tabacum Cells Induced by Priming Agents

(2016) Msizi I. Mhlongo et al.   Frontiers in Plant Science

iMet-Q: A User-Friendly Tool for Label-Free Metabolomics Quantitation Using Dynamic Peak-Width Determination

(2016) Hui-Yin Chang et al.   PLoS One

MET-XAlign: A Metabolite Cross-Alignment Tool for LC/MS-Based Comparative Metabolomics

(2015) Wenchao Zhang et al.   ANALYTICAL CHEMISTRY

Warpgroup: increased precision of metabolomic data processing by consensus integration bound analysis

(2015) Nathaniel G. Mahieu et al.   BIOINFORMATICS

Discovery and resupply of pharmacologically active plant-derived natural products: A review

(2015) Atanas G. Atanasov et al.   BIOTECHNOLOGY ADVANCES

IPO: a tool for automated optimization of XCMS parameters

(2015) Gunnar Libiseller et al.   BMC BIOINFORMATICS

High-throughput discovery metabolomics

(2015) Tobias Fuhrer et al.   CURRENT OPINION IN BIOTECHNOLOGY

Integrated metabolomics for abiotic stress responses in plants

(2015) Ryo Nakabayashi et al.   CURRENT OPINION IN PLANT BIOLOGY

Metabolite Profiling of Diverse Rice Germplasm and Identification of Conserved Metabolic Markers of Rice Roots in Response to Long-Term Mild Salinity Stress

(2015) Myung Nam et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

GridMass: a fast two-dimensional feature detection method for LC/MS

(2015) Victor Treviño et al.   JOURNAL OF MASS SPECTROMETRY

Combined mass spectrometric and chromatographic methods for in-depth analysis of phenolic secondary metabolites in barley leaves

(2015) Anna Piasecka et al.   JOURNAL OF MASS SPECTROMETRY

Signaling Mechanisms in Pattern-Triggered Immunity (PTI)

(2015) Jean Bigeard et al.   Molecular Plant

A new cyanogenic metabolite in Arabidopsis required for inducible pathogen defence

(2015) Jakub Rajniak et al.   NATURE

MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis

(2015) Hiroshi Tsugawa et al.   NATURE METHODS

The potential of mass spectrometry imaging in plant metabolomics: a review

(2015) Heino M. Heyman et al.   PHYTOCHEMISTRY REVIEWS

Mass spectrometry imaging for plant biology: a review

(2015) Berin A. Boughton et al.   PHYTOCHEMISTRY REVIEWS

A molecular physiological review of vegetative desiccation tolerance in the resurrection plant Xerophyta viscosa (Baker)

(2015) Jill M. Farrant et al.   PLANTA

Determination of growth stages and metabolic profiles inBrachypodium distachyonfor comparison of developmental context with Triticeae crops

(2015) Yoshihiko Onda et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

New insights explain that drought stress enhances the quality of spice and medicinal plants: potential applications

(2014) Maik Kleinwächter et al.   Agronomy for Sustainable Development

TracMass 2—A Modular Suite of Tools for Processing Chromatography-Full Scan Mass Spectrometry Data

(2014) Erik Tengstrand et al.   ANALYTICAL CHEMISTRY

MET-COFEA: A Liquid Chromatography/Mass Spectrometry Data Processing Platform for Metabolite Compound Feature Extraction and Annotation

(2014) Wenchao Zhang et al.   ANALYTICAL CHEMISTRY

Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics

(2014) F. Giacomoni et al.   BIOINFORMATICS

Data integration in the era of omics: current and future challenges

(2014) David Gomez-Cabrero et al.   BMC Systems Biology

Global plant-responding mechanisms to salt stress: physiological and molecular levels and implications in biotechnology

(2014) Xiaoli Tang et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

MarVis-Pathway: integrative and exploratory pathway analysis of non-targeted metabolomics data

(2014) Alexander Kaever et al.   Metabolomics

Integrated Analysis of the Effects of Cold and Dehydration on Rice Metabolites, Phytohormones, and Gene Transcripts

(2014) K. Maruyama et al.   PLANT PHYSIOLOGY

The Roles of Reactive Oxygen Metabolism in Drought: Not So Cut and Dried

(2014) G. Noctor et al.   PLANT PHYSIOLOGY

A Metabolic Profiling Strategy for the Dissection of Plant Defense against Fungal Pathogens

(2014) Konstantinos A. Aliferis et al.   PLoS One

Stable isotope-labeling studies in metabolomics: new insights into structure and dynamics of metabolic networks

(2014) Achuthanunni Chokkathukalam et al.   Bioanalysis

Metabolomics for unknown plant metabolites

(2013) Ryo Nakabayashi et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

eMZed: an open source framework in Python for rapid and interactive development of LC/MS data analysis workflows

(2013) Patrick Kiefer et al.   BIOINFORMATICS

MeltDB 2.0-advances of the metabolomics software system

(2013) N. Kessler et al.   BIOINFORMATICS

Phytochemical genomics — a new trend

(2013) Kazuki Saito   CURRENT OPINION IN PLANT BIOLOGY

Automated Label-free Quantification of Metabolites from Liquid Chromatography–Mass Spectrometry Data

(2013) Erhan Kenar et al.   MOLECULAR & CELLULAR PROTEOMICS

Using ProtMAX to create high-mass-accuracy precursor alignments from label-free quantitative mass spectrometry data generated in shotgun proteomics experiments

(2013) Volker Egelhofer et al.   Nature Protocols

Structural analysis and profiling of phenolic secondary metabolites of Mexican lupine species using LC–MS techniques

(2013) Anna Wojakowska et al.   PHYTOCHEMISTRY

PRIMe Update: Innovative Content for Plant Metabolomics and Integration of Gene Expression and Metabolite Accumulation

(2013) Tetsuya Sakurai et al.   PLANT AND CELL PHYSIOLOGY

Predicting Network Activity from High Throughput Metabolomics

(2013) Shuzhao Li et al.   PLoS Computational Biology

STATISTICAL METHODS FOR THE ANALYSIS OF HIGH-THROUGHPUT METABOLOMICS DATA

(2013) Jörg Bartel et al.   Computational and Structural Biotechnology Journal

XCMS Online: A Web-Based Platform to Process Untargeted Metabolomic Data

(2012) Ralf Tautenhahn et al.   ANALYTICAL CHEMISTRY

IDEOM: an Excel interface for analysis of LC–MS-based metabolomics data

(2012) Darren J. Creek et al.   BIOINFORMATICS

Chemical warfare or modulators of defence responses – the function of secondary metabolites in plant immunity

(2012) Paweł Bednarek   CURRENT OPINION IN PLANT BIOLOGY

Genetic engineering to improve plant performance under drought: physiological evaluation of achievements, limitations, and possibilities

(2012) David W. Lawlor   JOURNAL OF EXPERIMENTAL BOTANY

The interaction of plant biotic and abiotic stresses: from genes to the field

(2012) N. J. Atkinson et al.   JOURNAL OF EXPERIMENTAL BOTANY

Role of Metabolomics in Crop Improvement

(2012) Miyako Kusano et al.   JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY

Bioengineering for Salinity Tolerance in Plants: State of the Art

(2012) Pradeep K. Agarwal et al.   MOLECULAR BIOTECHNOLOGY

A cross-platform toolkit for mass spectrometry and proteomics

(2012) Matthew C Chambers et al.   NATURE BIOTECHNOLOGY

The Influence of Climate Change on Global Crop Productivity

(2012) D. B. Lobell et al.   PLANT PHYSIOLOGY

Metabolomics as a Hypothesis-Generating Functional Genomics Tool for the Annotation of Arabidopsis thaliana Genes of “Unknown Function”

(2012) Stephanie M. Quanbeck et al.   Frontiers in Plant Science

PeakML/mzMatch: A File Format, Java Library, R Library, and Tool-Chain for Mass Spectrometry Data Analysis

(2011) Richard A. Scheltema et al.   ANALYTICAL CHEMISTRY

Climate change impacts on global agricultural land availability

(2011) Xiao Zhang et al.   Environmental Research Letters

Mass Spectrometry Based Metabolomics to Identify Potential Biomarkers for Resistance in Barley against Fusarium Head Blight (Fusarium graminearum)

(2011) Kenchappa G. Kumaraswamy et al.   JOURNAL OF CHEMICAL ECOLOGY

MetAlign 3.0: performance enhancement by efficient use of advances in computer hardware

(2011) Arjen Lommen et al.   Metabolomics

High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions

(2011) Camila Caldana et al.   PLANT JOURNAL

Identification of metabolites related to mechanisms of resistance in barley against Fusarium graminearum, based on mass spectrometry

(2011) Venkatesh Bollina et al.   PLANT MOLECULAR BIOLOGY

MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

(2010) Tomáš Pluskal et al.   BMC BIOINFORMATICS

‘Omics’ analyses of regulatory networks in plant abiotic stress responses

(2010) Kaoru Urano et al.   CURRENT OPINION IN PLANT BIOLOGY

Metabolomics for plant stress response

(2010) Vladimir Shulaev et al.   PHYSIOLOGIA PLANTARUM

Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants

(2010) Sarvajeet Singh Gill et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Simple data-reduction method for high-resolution LC–MS data in metabolomics

(2009) RA Scheltema et al.   Bioanalysis

Simultaneous analysis of different classes of phytohormones in coconut (Cocos nucifera L.) water using high-performance liquid chromatography and liquid chromatography–tandem mass spectrometry after solid-phase extraction

(2008) Zhen Ma et al.   ANALYTICA CHIMICA ACTA

Analysis of Metabolomic Data Using Support Vector Machines

(2008) Sankar Mahadevan et al.   ANALYTICAL CHEMISTRY

Highly sensitive feature detection for high resolution LC/MS

(2008) Ralf Tautenhahn et al.   BMC BIOINFORMATICS

Simultaneous determination of gibberellic acid, indole-3-acetic acid and abscisic acid in wheat extracts by solid-phase extraction and liquid chromatography–electrospray tandem mass spectrometry

(2008) S HOU et al.   TALANTA

Metabolomics-assisted breeding: a viable option for crop improvement?

(2008) Alisdair R. Fernie et al.   TRENDS IN GENETICS