Contrasting effects of acute and chronic stress on the transcriptome, epigenome, and immune response of Atlantic salmon

DNA methylation as a predictor of fetal alcohol spectrum disorder

(2018) Alexandre A. Lussier et al.   Clinical Epigenetics

 Innate and adaptive immunity in teleost fish: a review

(2018) C. Uribe et al.   VETERINARNI MEDICINA

Prenatal stress and epigenetics

(2017) L. Cao-Lei et al.   NEUROSCIENCE AND BIOBEHAVIORAL REVIEWS

A complex association between DNA methylation and gene expression in human placenta at first and third trimesters

(2017) Yen Ching Lim et al.   PLoS One

Genome-wide DNA methylation and transcriptome analyses reveal genes involved in immune responses of pig peripheral blood mononuclear cells to poly I:C

(2017) Haifei Wang et al.   Scientific Reports

Hypomethylation of HOXA4 promoter is common in Silver-Russell syndrome and growth restriction and associates with stature in healthy children

(2017) Mari Muurinen et al.   Scientific Reports

New Paradigms to Help Solve the Global Aquaculture Disease Crisis

(2017) Grant D. Stentiford et al.   PLoS Pathogens

Impacts of Early Life Stress on the Methylome and Transcriptome of Atlantic Salmon

(2017) Hooman K. Moghadam et al.   Scientific Reports

Effects of the Social Environment and Stress on Glucocorticoid Receptor Gene Methylation: A Systematic Review

(2016) Gustavo Turecki et al.   BIOLOGICAL PSYCHIATRY

Divergent effects of repeated restraint versus chronic variable stress on prefrontal cortical immune status after LPS injection

(2016) Brittany L. Smith et al.   BRAIN BEHAVIOR AND IMMUNITY

The extracellular matrix: Tools and insights for the “omics” era

(2016) Alexandra Naba et al.   MATRIX BIOLOGY

The Atlantic salmon genome provides insights into rediploidization

(2016) Sigbjørn Lien et al.   NATURE

Long-term effects of early life stress exposure: Role of epigenetic mechanisms

(2016) Dafne M. Silberman et al.   PHARMACOLOGICAL RESEARCH

Long noncoding RNAs in DNA methylation: new players stepping into the old game

(2016) Yu Zhao et al.   Cell and Bioscience

Coping with a changing environment: the effects of early life stress

(2016) Marco A. Vindas et al.   Royal Society Open Science

Experimental design and statistical analyses of fish growth studies

(2015) Helgi Thorarensen et al.   AQUACULTURE

Epigenetics in autoimmune diseases: Pathogenesis and prospects for therapy

(2015) Zimu Zhang et al.   AUTOIMMUNITY REVIEWS

Global transcriptomic profiling demonstrates induction of oxidative stress and of compensatory cellular stress responses in brown trout exposed to glyphosate and Roundup

(2015) Tamsyn M Uren Webster et al.   BMC GENOMICS

A Conserved Circular Network of Coregulated Lipids Modulates Innate Immune Responses

(2015) Marielle S. Köberlin et al.   CELL

The positive and negative consequences of stressors during early life

(2015) Pat Monaghan et al.   EARLY HUMAN DEVELOPMENT

Ultrapure LPS induces inflammatory and antibacterial responses attenuated in vitro by exogenous sera in Atlantic cod and Atlantic salmon

(2015) Marit Seppola et al.   FISH & SHELLFISH IMMUNOLOGY

Migration-related phenotypic divergence is associated with epigenetic modifications in rainbow trout

(2015) Melinda R. Baerwald et al.   MOLECULAR ECOLOGY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Stress dynamically regulates behavior and glutamatergic gene expression in hippocampus by opening a window of epigenetic plasticity

(2015) Carla Nasca et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CG gene body DNA methylation changes and evolution of duplicated genes in cassava

(2015) Haifeng Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Temporal Changes in Biological Responses and Uncertainty in Assessing Risks of Endocrine-Disrupting Chemicals: Insights from Intensive Time-Course Studies with Fish

(2015) Gerald T. Ankley et al.   TOXICOLOGICAL SCIENCES

Disparate developmental patterns of immune responses to bacterial and viral infections in fish

(2015) Rosario Castro et al.   Scientific Reports

Acute and chronic stress differentially regulate cyclin-dependent kinase 5 in mouse brain: implications to glucocorticoid actions and major depression

(2015) A Papadopoulou et al.   Translational Psychiatry

On the presence and role of human gene-body DNA methylation

(2015) Daudi Jjingo et al.   Oncotarget

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Epigenetic programming by early-life stress: Evidence from human populations

(2014) A. M. Vaiserman   DEVELOPMENTAL DYNAMICS

Effects of stress on immune function: the good, the bad, and the beautiful

(2014) Firdaus S. Dhabhar   IMMUNOLOGIC RESEARCH

Effect of temperature and substrate on whole body cortisol and size of larval white sturgeon (Acipenser transmontanusRichardson, 1836)

(2014) L. C. Bates et al.   JOURNAL OF APPLIED ICHTHYOLOGY

Cell division and the maintenance of epithelial order

(2014) Katerina Ragkousi et al.   JOURNAL OF CELL BIOLOGY

Mind the gap: glucocorticoids modulate hippocampal glutamate tone underlying individual differences in stress susceptibility

(2014) C Nasca et al.   MOLECULAR PSYCHIATRY

Remodelling the extracellular matrix in development and disease

(2014) Caroline Bonnans et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Stress and the dynamic genome: Steroids, epigenetics, and the transposome: Fig. 1.

(2014) Richard G. Hunter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide DNA Methylation Profiles and Their Relationships with mRNA and the microRNA Transcriptome in Bovine Muscle Tissue (Bos taurine)

(2014) Yong-Zhen Huang et al.   Scientific Reports

Mapping the zebrafish brain methylome using reduced representation bisulfite sequencing

(2013) Aniruddha Chatterjee et al.   Epigenetics

The mucosal immune system of fish: The evolution of tolerating commensals while fighting pathogens

(2013) Daniela Gomez et al.   FISH & SHELLFISH IMMUNOLOGY

Positive selection pressure within teleost toll-like receptors tlr21 and tlr22 subfamilies and their response to temperature stress and microbial components in zebrafish

(2012) Arvind Y. M. Sundaram et al.   MOLECULAR BIOLOGY REPORTS

Functions of DNA methylation: islands, start sites, gene bodies and beyond

(2012) Peter A. Jones   NATURE REVIEWS GENETICS

Use of a Generalized Additive Model to Investigate Key Abiotic Factors Affecting Microcystin Cellular Quotas in Heavy Bloom Areas of Lake Taihu

(2012) Min Tao et al.   PLoS One

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

Stress and immune modulation in fish

(2011) Lluis Tort   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Cell Signaling by Receptor Tyrosine Kinases

(2010) Mark A. Lemmon et al.   CELL

Local DNA hypomethylation activates genes in rice endosperm

(2010) A. Zemach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Immune- and stress-related transcriptomic responses of Solea senegalensis stimulated with lipopolysaccharide and copper sulphate using heterologous cDNA microarrays

(2009) Inmaculada Osuna-Jiménez et al.   FISH & SHELLFISH IMMUNOLOGY

Evolution of Lipopolysaccharide (LPS) Recognition and Signaling: Fish TLR4 Does Not Recognize LPS and Negatively Regulates NF- B Activation

(2009) M. P. Sepulcre et al.   JOURNAL OF IMMUNOLOGY

Epigenetic regulation of the glucocorticoid receptor in human brain associates with childhood abuse

(2009) Patrick O McGowan et al.   NATURE NEUROSCIENCE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Stress and disorders of the stress system

(2009) George P. Chrousos   Nature Reviews Endocrinology

Enhancing versus Suppressive Effects of Stress on Immune Function: Implications for Immunoprotection and Immunopathology

(2009) Firdaus S. Dhabhar   NEUROIMMUNOMODULATION

Cold shock and fish

(2008) M. R. Donaldson et al.   JOURNAL OF FISH BIOLOGY

Mucins in the mucosal barrier to infection

(2008) S K Linden et al.   Mucosal Immunology