Impacts of Early Life Stress on the Methylome and Transcriptome of Atlantic Salmon

The Atlantic salmon genome provides insights into rediploidization

(2016) Sigbjørn Lien et al.   NATURE

The stressed cytoskeleton: How actin dynamics can shape stress-related consequences on synaptic plasticity and complex behavior

(2016) Michael A. van der Kooij et al.   NEUROSCIENCE AND BIOBEHAVIORAL REVIEWS

Life-time protection against severe heat stress by exposing young Drosophila melanogaster flies to a mild cold stress

(2015) Éric Le Bourg   BIOGERONTOLOGY

Repeated exposure to stressful conditions can have beneficial effects on survival

(2015) Valeria Marasco et al.   EXPERIMENTAL GERONTOLOGY

Novel Genes Critical for Hypoxic Preconditioning in Zebrafish Are Regulators of Insulin and Glucose Metabolism

(2015) T. Manchenkov et al.   G3-Genes Genomes Genetics

Connective-Tissue Growth Factor (CTGF/CCN2) Induces Astrogenesis and Fibronectin Expression of Embryonic Neural Cells In Vitro

(2015) Fabio A. Mendes et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Characterization of a novel CC chemokine CCL4 in immune response induced by nitrite and its expression differences among three populations of Megalobrama amblycephala

(2014) Jie Zhang et al.   FISH & SHELLFISH IMMUNOLOGY

Analyzing Cold Tolerance Mechanism in Transgenic Zebrafish (Danio rerio)

(2014) Qian Wang et al.   PLoS One

The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates

(2014) Camille Berthelot et al.   Nature Communications

Phosphatase of Regenerating Liver 2 (PRL2) Deficiency Impairs Kit Signaling and Spermatogenesis

(2013) Yuanshu Dong et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

DNA Methylation, Behavior and Early Life Adversity

(2013) Moshe Szyf   Journal of Genetics and Genomics

Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array

(2013) Rosalind A Eeles et al.   NATURE GENETICS

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

DNA methylation: roles in mammalian development

(2013) Zachary D. Smith et al.   NATURE REVIEWS GENETICS

The Role of Connective Tissue Growth Factor (CTGF/CCN2) in Skeletogenesis

(2012) John A. Arnott et al.   CRITICAL REVIEWS IN EUKARYOTIC GENE EXPRESSION

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Transcriptomic Characterization of Temperature Stress Responses in Larval Zebrafish

(2012) Yong Long et al.   PLoS One

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

(2012) Altuna Akalin et al.   GENOME BIOLOGY

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

Exposing the DNA methylome iceberg

(2011) ’Matladi N. Ndlovu et al.   TRENDS IN BIOCHEMICAL SCIENCES

SLIM: a sliding linear model for estimating the proportion of true null hypotheses in datasets with dependence structures

(2010) Hong-Qiang Wang et al.   BIOINFORMATICS

Hormesis, Adaptive Epigenetic Reorganization, and Implications for Human Health and Longevity

(2010) Alexander M. Vaiserman   Dose-Response

Regulation of actin cytoskeleton dynamics in cells

(2010) Sung Haeng Lee et al.   MOLECULES AND CELLS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Hormesis, aging and longevity

(2009) Éric Le Bourg   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Awareness of Hormesis Will Enhance Future Research in Basic and Applied Neuroscience

(2009) Mark P. Mattson   CRITICAL REVIEWS IN TOXICOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Plasma cortisol response to stress in juvenile rainbow trout is influenced by their life history during early development and by egg cortisol content

(2008) B. Auperin et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY