High-throughput sequencing of small RNAs revealed the diversified cold-responsive pathways during cold stress in the wild banana (Musa itinerans)

Abiotic stress miRNomes in the Triticeae

(2016) Burcu Alptekin et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Wheat miRNA ancestors: evident by transcriptome analysis of A, B, and D genome donors

(2016) Burcu Alptekin et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

How plants handle multiple stresses: hormonal interactions underlying responses to abiotic stress and insect herbivory

(2016) Duy Nguyen et al.   PLANT MOLECULAR BIOLOGY

Interchangeable SF3B1 inhibitors interfere with pre-mRNA splicing at multiple stages

(2016) Kerstin A. Effenberger et al.   RNA

Dissecting miRNAs in Wheat D Genome Progenitor, Aegilops tauschii

(2016) Bala A. Akpinar et al.   Frontiers in Plant Science

Effects of low temperature on mRNA and small RNA transcriptomes in Solanum lycopersicoides leaf revealed by RNA-Seq

(2015) Hongyu Chen et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Uncovering the novel characteristics of Asian honey bee, Apis cerana, by whole genome sequencing

(2015) Doori Park et al.   BMC GENOMICS

Characterization of miRNAs associated with Botrytis cinerea infection of tomato leaves

(2015) Weibo Jin et al.   BMC PLANT BIOLOGY

Root precursors of microRNAs in wild emmer and modern wheats show major differences in response to drought stress

(2015) Bala Ani Akpinar et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Plant miRNAs: biogenesis, organization and origins

(2015) Hikmet Budak et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Selenium and sulfur influence ethylene formation and alleviate cadmium-induced oxidative stress by improving proline and glutathione production in wheat

(2015) M. Iqbal R. Khan et al.   JOURNAL OF PLANT PHYSIOLOGY

Red-Light-Dependent Interaction of phyB with SPA1 Promotes COP1–SPA1 Dissociation and Photomorphogenic Development in Arabidopsis

(2015) Xue-Dan Lu et al.   Molecular Plant

Integrating circadian dynamics with physiological processes in plants

(2015) Kathleen Greenham et al.   NATURE REVIEWS GENETICS

The expanding world of small RNAs in plants

(2015) Filipe Borges et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Low temperature tolerance in plants: Changes at the protein level

(2015) Mohsen Janmohammadi et al.   PHYTOCHEMISTRY

miR408is involved in abiotic stress responses in Arabidopsis

(2015) Chao Ma et al.   PLANT JOURNAL

Regulation of the Arabidopsis CBF regulon by a complex low-temperature regulatory network

(2015) Sunchung Park et al.   PLANT JOURNAL

HY5 regulates nitrite reductase 1 (NIR1) and ammonium transporter1;2 (AMT1;2) in Arabidopsis seedlings

(2015) Lifen Huang et al.   PLANT SCIENCE

Stress responsive miRNAs and isomiRs in cereals

(2015) Hikmet Budak et al.   PLANT SCIENCE

High-Throughput Sequencing Identifies Novel and Conserved Cucumber (Cucumis sativus L.) microRNAs in Response to Cucumber Green Mottle Mosaic Virus Infection

(2015) H. W. Liu et al.   PLoS One

Circadian rhythms and post-transcriptional regulation in higher plants

(2015) Andrés Romanowski et al.   Frontiers in Plant Science

Molecular cloning and expression analysis of KIN10 and cold-acclimation related genes in wild banana ‘Huanxi’ (Musa itinerans)

(2015) Weihua Liu et al.   SpringerPlus

Role of MicroRNAs in Biotic and Abiotic Stress Responses in Crop Plants

(2014) Rajesh Kumar   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Chilling acclimation provides immunity to stress by altering regulatory networks and inducing genes with protective functions in Cassava

(2014) Changying Zeng et al.   BMC PLANT BIOLOGY

Identification and characterization of miRNAome in root, stem, leaf and tuber developmental stages of potato (Solanum tuberosum L.) by high-throughput sequencing

(2014) Nisha Lakhotia et al.   BMC PLANT BIOLOGY

Glycoprotein composition along the pistil of Malus x domestica and the modulation of pollen tube growth

(2014) Juan M Losada et al.   BMC PLANT BIOLOGY

Identification and characterization of cold-responsive microRNAs in tea plant (Camellia sinensis) and their targets using high-throughput sequencing and degradome analysis

(2014) Yue Zhang et al.   BMC PLANT BIOLOGY

History and current status of wheat miRNAs using next-generation sequencing and their roles in development and stress

(2014) H. Budak et al.   Briefings in Functional Genomics

ROS Function in Redox Signaling and Oxidative Stress

(2014) Michael Schieber et al.   CURRENT BIOLOGY

Identification of Cold-Responsive miRNAs and Their Target Genes in Nitrogen-Fixing Nodules of Soybean

(2014) Senlei Zhang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

COP1 Jointly Modulates Cytoskeletal Processes and Electrophysiological Responses Required for Stomatal Closure

(2014) Rajnish Khanna et al.   Molecular Plant

System analysis of microRNAs in the development and aluminium stress responses of the maize root system

(2014) Xiangpei Kong et al.   PLANT BIOTECHNOLOGY JOURNAL

Beyond the Barrier: Communication in the Root through the Endodermis

(2014) N. E. Robbins et al.   PLANT PHYSIOLOGY

Insight into small RNA abundance and expression in high- and low-temperature stress response using deep sequencing in Arabidopsis

(2014) Vesselin Baev et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

MicroRNAs involving in cold, wounding and salt stresses in Triticum aestivum L.

(2014) Bing Wang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

A Contig-Based Strategy for the Genome-Wide Discovery of MicroRNAs without Complete Genome Resources

(2014) Jun-Zhi Wen et al.   PLoS One

Differential sRNA Regulation in Leaves and Roots of Sugarcane under Water Depletion

(2014) Flávia Thiebaut et al.   PLoS One

OsNAP connects abscisic acid and leaf senescence by fine-tuning abscisic acid biosynthesis and directly targeting senescence-associated genes in rice

(2014) Chengzhen Liang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

“A draft Musa balbisiana genome sequence for molecular genetics in polyploid, inter- and intra-specific Musa hybrids”

(2013) Mark W Davey et al.   BMC GENOMICS

Ambient Temperature Affects the Temperature Threshold for TRPM8 Activation through Interaction of Phosphatidylinositol 4,5-Bisphosphate

(2013) F. Fujita et al.   JOURNAL OF NEUROSCIENCE

A gateway with a guard: How the endodermis regulates growth through hormone signaling

(2013) José R. Dinneny   PLANT SCIENCE

microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula

(2013) Rodney P. Eyles et al.   PLANTA

Prp22 and Spliceosome Components Regulate Chromatin Dynamics in Germ-Line Polyploid Cells

(2013) Stephen Klusza et al.   PLoS One

Metabolic regulation of circadian clocks

(2013) Michael J. Haydon et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

The roles of selenium in protecting plants against abiotic stresses

(2012) Renwei Feng et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

miR395 is a general component of the sulfate assimilation regulatory network in Arabidopsis

(2012) Colette A. Matthewman et al.   FEBS LETTERS

The R2R3-MYB, bHLH, WD40, and related transcription factors in flavonoid biosynthesis

(2012) Lei Zhao et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Quantitative Proteomic Analysis Reveals that Antioxidation Mechanisms Contribute to Cold Tolerance in Plantain (Musa paradisiacaL.; ABB Group) Seedlings

(2012) Qiao-Song Yang et al.   MOLECULAR & CELLULAR PROTEOMICS

Rhythmic oscillation of histone acetylation and methylation at the Arabidopsis central clock loci

(2012) Hae-Ryong Song et al.   MOLECULES AND CELLS

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

(2012) Angélique D’Hont et al.   NATURE

Arabidopsis Type-III Phosphatidylinositol 4-Kinases β1 and β2 are Upstream of the Phospholipase C Pathway Triggered by Cold Exposure

(2012) Elise Delage et al.   PLANT AND CELL PHYSIOLOGY

Functions of microRNAs in plant stress responses

(2012) Ramanjulu Sunkar et al.   TRENDS IN PLANT SCIENCE

The photomorphogenic repressors COP1 and DET1: 20 years later

(2012) On Sun Lau et al.   TRENDS IN PLANT SCIENCE

Interactions between plant circadian clocks and solute transport

(2011) Michael J. Haydon et al.   JOURNAL OF EXPERIMENTAL BOTANY

Decrease in phosphatidylinositol 4,5-bisphosphate levels mediates desensitization of the cold sensor TRPM8 channels

(2011) Yevgen Yudin et al.   JOURNAL OF PHYSIOLOGY-LONDON

A novel protein family mediates Casparian strip formation in the endodermis

(2011) Daniele Roppolo et al.   NATURE

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

Dehydration Stress-Responsive miRNA in Brachypodium distachyon: Evident by Genome-Wide Screening of microRNAs Expression

(2011) Hikmet Budak et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

ROS and redox signalling in the response of plants to abiotic stress

(2011) NOBUHIRO SUZUKI et al.   PLANT CELL AND ENVIRONMENT

Interplay of SLIM1 and miR395 in the regulation of sulfate assimilation in Arabidopsis

(2011) Cintia G. Kawashima et al.   PLANT JOURNAL

The key enzyme of sulfate assimilation, adenosine 5′-phosphosulfate reductase, is regulated by HY5 in Arabidopsis

(2011) Bok-Rye Lee et al.   PLANT JOURNAL

The circadian oscillator gene GIGANTEA mediates a long-term response of the Arabidopsis thaliana circadian clock to sucrose

(2011) N. Dalchau et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multidisciplinary perspectives on banana (Musa spp.) domestication

(2011) X. Perrier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Selenium Modifies the Effect of Short-Term Chilling Stress on Cucumber Plants

(2010) Barbara Hawrylak-Nowak et al.   BIOLOGICAL TRACE ELEMENT RESEARCH

Regulation of barley miRNAs upon dehydration stress correlated with target gene expression

(2010) Melda Kantar et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Profiling of cold-stress-responsive miRNAs in rice by microarrays

(2010) De-Kang Lv et al.   GENE

Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application

(2010) Turgay Unver et al.   MOLECULAR GENETICS AND GENOMICS

Histone dynamics and roles of histone acetyltransferases during cold-induced gene regulation in Arabidopsis

(2010) Kanchan Pavangadkar et al.   PLANT MOLECULAR BIOLOGY

Molecular Mechanisms of Selenium Tolerance and Hyperaccumulation in Stanleya pinnata

(2010) J. L. Freeman et al.   PLANT PHYSIOLOGY

Gibberellin-GID1-DELLA: A Pivotal Regulatory Module for Plant Growth and Development

(2010) T.-p. Sun   PLANT PHYSIOLOGY

miRNA expression patterns of Triticum dicoccoides in response to shock drought stress

(2010) Melda Kantar et al.   PLANTA

MicroRNAs with macro-effects on plant stress responses

(2010) Ramanjulu Sunkar   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response

(2009) Jingyu Zhang et al.   BMC GENOMICS

High throughput sequencing technology reveals that the taxoid elicitor methyl jasmonate regulates microRNA expression in Chinese yew (Taxus chinensis)

(2009) Deyou Qiu et al.   GENE

Analysis of the platypus genome suggests a transposon origin for mammalian imprinting

(2009) Andrew J Pask et al.   GENOME BIOLOGY

The selectivity of inhibitors of protein kinase CK2: an update

(2008) Mario A. Pagano et al.   BIOCHEMICAL JOURNAL

A toolkit for analysing large-scale plant small RNA datasets

(2008) S. Moxon et al.   BIOINFORMATICS

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

(2008) S. Moxon et al.   GENOME RESEARCH

Strigolactone inhibition of shoot branching

(2008) Victoria Gomez-Roldan et al.   NATURE

MAPK Signaling Regulates Nitric Oxide and NADPH Oxidase-Dependent Oxidative Bursts in Nicotiana benthamiana

(2008) S. Asai et al.   PLANT CELL

Stress-responsive microRNAs inPopulus

(2008) Shanfa Lu et al.   PLANT JOURNAL

Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types

(2008) Cintia Goulart Kawashima et al.   PLANT JOURNAL

Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana

(2008) H.-H. Liu et al.   RNA

Convergent energy and stress signaling

(2008) Elena Baena-González et al.   TRENDS IN PLANT SCIENCE

Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development

(2008) Michael F Covington et al.   GENOME BIOLOGY