Integrating circadian dynamics with physiological processes in plants

Photoperiodic Flowering: Time Measurement Mechanisms in Leaves

(2015) Young Hun Song et al.   Annual Review of Plant Biology

ELF3-PIF4 Interaction Regulates Plant Growth Independently of the Evening Complex

(2015) Cristina Nieto et al.   CURRENT BIOLOGY

ELF3 Controls Thermoresponsive Growth in Arabidopsis

(2015) Mathew S. Box et al.   CURRENT BIOLOGY

Transcriptional networks — crops, clocks, and abiotic stress

(2015) Malia A Gehan et al.   CURRENT OPINION IN PLANT BIOLOGY

Evolutionary Relationships Among Barley and Arabidopsis Core Circadian Clock and Clock-Associated Genes

(2015) Cristiane P. G. Calixto et al.   JOURNAL OF MOLECULAR EVOLUTION

Environmental Stresses Modulate Abundance and Timing of Alternatively Spliced Circadian Transcripts in Arabidopsis

(2015) Sergei A. Filichkin et al.   Molecular Plant

Linked circadian outputs control elongation growth and flowering in response to photoperiod and temperature

(2015) D. D. Seaton et al.   Molecular Systems Biology

Punctual Transcriptional Regulation by the Rice Circadian Clock under Fluctuating Field Conditions

(2015) Jun Matsuzaki et al.   PLANT CELL

RNA around the clock – regulation at the RNA level in biological timing

(2015) Christine Nolte et al.   Frontiers in Plant Science

Circadian rhythms and post-transcriptional regulation in higher plants

(2015) Andrés Romanowski et al.   Frontiers in Plant Science

A wheat homologue of PHYTOCLOCK 1 is a candidate gene conferring the early heading phenotype to einkorn wheat

(2015) Nobuyuki Mizuno et al.   GENES & GENETIC SYSTEMS

Molecular control of seasonal flowering in rice, arabidopsis and temperate cereals

(2014) Roshi Shrestha et al.   ANNALS OF BOTANY

Alternative splicing and nonsense-mediated decay of circadian clock genes under environmental stress conditions in Arabidopsis

(2014) Young-Ju Kwon et al.   BMC PLANT BIOLOGY

Transcriptional Regulation of LUX by CBF1 Mediates Cold Input to the Circadian Clock in Arabidopsis

(2014) Brenda Y. Chow et al.   CURRENT BIOLOGY

Flowering responses to seasonal cues: what's new?

(2014) Maida Romera-Branchat et al.   CURRENT OPINION IN PLANT BIOLOGY

Tissue-specific clocks in Arabidopsis show asymmetric coupling

(2014) Motomu Endo et al.   NATURE

Adaptation to the Local Environment by Modifications of the Photoperiod Response in Crops

(2014) Norihito Nakamichi   PLANT AND CELL PHYSIOLOGY

Differential Control of Pre-Invasive and Post-Invasive Antibacterial Defense by the Arabidopsis Circadian Clock

(2014) Christin Korneli et al.   PLANT AND CELL PHYSIOLOGY

Differentially Phased Leaf Growth and Movements in Arabidopsis Depend on Coordinated Circadian and Light Regulation

(2014) T. Dornbusch et al.   PLANT CELL

Daily Changes in Temperature, Not the Circadian Clock, Regulate Growth Rate in Brachypodium distachyon

(2014) Dominick A. Matos et al.   PLoS One

Natural diversity in daily rhythms of gene expression contributes to phenotypic variation

(2014) Amaury de Montaigu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PHYTOCHROME C plays a major role in the acceleration of wheat flowering under long-day photoperiod

(2014) A. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rethinking Transcriptional Activation in the Arabidopsis Circadian Clock

(2014) Karl Fogelmark et al.   PLoS Computational Biology

Modelling the widespread effects of TOC1 signalling on the plant circadian clock and its outputs

(2013) Alexandra Pokhilko et al.   BMC Systems Biology

ROS as key players in plant stress signalling

(2013) A. Baxter et al.   JOURNAL OF EXPERIMENTAL BOTANY

Adjustment of carbon fluxes to light conditions regulates the daily turnover of starch in plants: a computational model

(2013) Alexandra Pokhilko et al.   Molecular BioSystems

Photosynthetic entrainment of the Arabidopsis thaliana circadian clock

(2013) Michael J. Haydon et al.   NATURE

Iron Is Involved in the Maintenance of Circadian Period Length in Arabidopsis

(2013) Y.-Y. Chen et al.   PLANT PHYSIOLOGY

Arabidopsis CRY2 and ZTL mediate blue-light regulation of the transcription factor CIB1 by distinct mechanisms

(2013) H. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The effect of day-neutral mutations in barley and wheat on the interaction between photoperiod and vernalization

(2013) Adrian S. Turner et al.   THEORETICAL AND APPLIED GENETICS

Wheels within wheels: the plant circadian system

(2013) Polly Yingshan Hsu et al.   TRENDS IN PLANT SCIENCE

Multiple bHLH Proteins form Heterodimers to Mediate CRY2-Dependent Regulation of Flowering-Time in Arabidopsis

(2013) Yawen Liu et al.   PLoS Genetics

Crosstalk between the Circadian Clock and Innate Immunity in Arabidopsis

(2013) Chong Zhang et al.   PLoS Pathogens

Arabidopsis plants perform arithmetic division to prevent starvation at night

(2013) Antonio Scialdone et al.   eLife

Dynamical feedback between circadian clock and sucrose availability explains adaptive response of starch metabolism to various photoperiods

(2013) François G. Feugier et al.   Frontiers in Plant Science

Defence on demand: mechanisms behind optimal defence patterns

(2012) Stefan Meldau et al.   ANNALS OF BOTANY

Unproductive alternative splicing and nonsense mRNAs: A widespread phenomenon among plant circadian clock genes

(2012) Sergei A Filichkin et al.   Biology Direct

Expression conservation within the circadian clock of a monocot: natural variation at barley Ppd-H1 affects circadian expression of flowering time genes, but not clock orthologs

(2012) Chiara Campoli et al.   BMC PLANT BIOLOGY

Deciphering and Prediction of Transcriptome Dynamics under Fluctuating Field Conditions

(2012) Atsushi J. Nagano et al.   CELL

Structural variation in the 5′ upstream region of photoperiod-insensitive alleles Ppd-A1a and Ppd-B1a identified in hexaploid wheat (Triticum aestivum L.), and their effect on heading time

(2012) Hidetaka Nishida et al.   MOLECULAR BREEDING

The genetic basis of flowering responses to seasonal cues

(2012) Fernando Andrés et al.   NATURE REVIEWS GENETICS

Ef7 Encodes an ELF3-like Protein and Promotes Rice Flowering by Negatively Regulating the Floral Repressor Gene Ghd7 under Both Short- and Long-Day Conditions

(2012) Hiroki Saito et al.   PLANT AND CELL PHYSIOLOGY

Preferential Retention of Circadian Clock Genes during Diploidization following Whole Genome Triplication inBrassica rapa

(2012) Ping Lou et al.   PLANT CELL

Alternative Splicing Mediates Responses of the Arabidopsis Circadian Clock to Temperature Changes

(2012) A. B. James et al.   PLANT CELL

A Self-Regulatory Circuit of CIRCADIAN CLOCK-ASSOCIATED1 Underlies the Circadian Clock Regulation of Temperature Responses inArabidopsis

(2012) Pil Joon Seo et al.   PLANT CELL

The Arabidopsis E3 Ubiquitin Ligase HOS1 Negatively Regulates CONSTANS Abundance in the Photoperiodic Control of Flowering

(2012) A. Lazaro et al.   PLANT CELL

TIME FOR COFFEE Represses Accumulation of the MYC2 Transcription Factor to Provide Time-of-Day Regulation of Jasmonate Signaling inArabidopsis

(2012) Jieun Shin et al.   PLANT CELL

Arabidopsis Defense against Botrytis cinerea: Chronology and Regulation Deciphered by High-Resolution Temporal Transcriptomic Analysis

(2012) O. Windram et al.   PLANT CELL

The impact of photoperiod insensitive Ppd-1a mutations on the photoperiod pathway across the three genomes of hexaploid wheat (Triticum aestivum)

(2012) Lindsay M. Shaw et al.   PLANT JOURNAL

Reciprocal Interaction of the Circadian Clock with the Iron Homeostasis Network in Arabidopsis

(2012) S. Hong et al.   PLANT PHYSIOLOGY

OsELF3-1, an Ortholog of Arabidopsis EARLY FLOWERING 3, Regulates Rice Circadian Rhythm and Photoperiodic Flowering

(2012) Junming Zhao et al.   PLoS One

Transcriptional repressor PRR5 directly regulates clock-output pathways

(2012) N. Nakamichi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cozzarelli Prize Winner: Arabidopsis synchronizes jasmonate-mediated defense with insect circadian behavior

(2012) D. Goodspeed et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CIRCADIAN CLOCK-ASSOCIATED 1 regulates ROS homeostasis and oxidative stress responses

(2012) A. G. Lai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping the Core of the Arabidopsis Circadian Clock Defines the Network Structure of the Oscillator

(2012) W. Huang et al.   SCIENCE

FKF1 Conveys Timing Information for CONSTANS Stabilization in Photoperiodic Flowering

(2012) Y. H. Song et al.   SCIENCE

Blue Light-Dependent Interaction of CRY2 with SPA1 Regulates COP1 activity and Floral Initiation in Arabidopsis

(2011) Zecheng Zuo et al.   CURRENT BIOLOGY

Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in rice

(2011) Ryo Ishikawa et al.   MOLECULAR GENETICS AND GENOMICS

The ELF4–ELF3–LUX complex links the circadian clock to diurnal control of hypocotyl growth

(2011) Dmitri A. Nusinow et al.   NATURE

Timing of plant immune responses by a central circadian regulator

(2011) Wei Wang et al.   NATURE

Circadian control of root elongation and C partitioning in Arabidopsis thaliana

(2011) NIMA YAZDANBAKHSH et al.   PLANT CELL AND ENVIRONMENT

PIF Genes Mediate the Effect of Sucrose on Seedling Growth Dynamics

(2011) Jodi L. Stewart et al.   PLoS One

Global Profiling of Rice and Poplar Transcriptomes Highlights Key Conserved Circadian-Controlled Pathways and cis-Regulatory Modules

(2011) Sergei A. Filichkin et al.   PLoS One

Tissue Specific Diurnal Rhythms of Metabolites and Their Regulation during Herbivore Attack in a Native Tobacco, Nicotiana attenuata

(2011) Sang-Gyu Kim et al.   PLoS One

Defence Responses of Arabidopsis thaliana to Infection by Pseudomonas syringae Are Regulated by the Circadian Clock

(2011) Vaibhav Bhardwaj et al.   PLoS One

The circadian oscillator gene GIGANTEA mediates a long-term response of the Arabidopsis thaliana circadian clock to sucrose

(2011) N. Dalchau et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CIRCADIAN CLOCK-ASSOCIATED 1 and LATE ELONGATED HYPOCOTYL regulate expression of the C-REPEAT BINDING FACTOR (CBF) pathway in Arabidopsis

(2011) M. A. Dong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

REVEILLE8 and PSEUDO-REPONSE REGULATOR5 Form a Negative Feedback Loop within the Arabidopsis Circadian Clock

(2011) Reetika Rawat et al.   PLoS Genetics

A stress-free walk from Arabidopsis to crops

(2010) Yin Hoon Chew et al.   CURRENT OPINION IN BIOTECHNOLOGY

Genetic mapping of natural variation in a shade avoidance response: ELF3 is the candidate gene for a QTL in hypocotyl growth regulation

(2010) M. Paula Coluccio et al.   JOURNAL OF EXPERIMENTAL BOTANY

Diel time-courses of leaf growth in monocot and dicot species: endogenous rhythms and temperature effects

(2010) Richard Poiré et al.   JOURNAL OF EXPERIMENTAL BOTANY

A methyl transferase links the circadian clock to the regulation of alternative splicing

(2010) Sabrina E. Sanchez et al.   NATURE

A pair of floral regulators sets critical day length for Hd3a florigen expression in rice

(2010) Hironori Itoh et al.   NATURE GENETICS

Time of day shapes Arabidopsis drought transcriptomes

(2010) Olivia Wilkins et al.   PLANT JOURNAL

Interaction with Diurnal and Circadian Regulation Results in Dynamic Metabolic and Transcriptional Changes during Cold Acclimation in Arabidopsis

(2010) Carmen Espinoza et al.   PLoS One

Type II protein arginine methyltransferase 5 (PRMT5) is required for circadian period determination in Arabidopsis thaliana

(2010) S. Hong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Arginine methylation mediated by the Arabidopsis homolog of PRMT5 is essential for proper pre-mRNA splicing

(2010) X. Deng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Circadian control of carbohydrate availability for growth in Arabidopsis plants at night

(2010) A. Graf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant development goes like clockwork

(2010) Amaury de Montaigu et al.   TRENDS IN GENETICS

Network Analysis Identifies ELF3 as a QTL for the Shade Avoidance Response in Arabidopsis

(2010) José M. Jiménez-Gómez et al.   PLoS Genetics

The Circadian System in Higher Plants

(2009) Stacey L. Harmer   Annual Review of Plant Biology

Weather and Seasons Together Demand Complex Biological Clocks

(2009) Carl Troein et al.   CURRENT BIOLOGY

Evidence for the adaptive significance of circadian rhythms

(2009) Shai Yerushalmi et al.   ECOLOGY LETTERS

TOC1 functions as a molecular switch connecting the circadian clock with plant responses to drought

(2009) Tommaso Legnaioli et al.   EMBO JOURNAL

Transcript Profiling of an Arabidopsis PSEUDO RESPONSE REGULATOR Arrhythmic Triple Mutant Reveals a Role for the Circadian Clock in Cold Stress Response

(2009) Norihito Nakamichi et al.   PLANT AND CELL PHYSIOLOGY

The Circadian Clock Regulates the Photoperiodic Response of Hypocotyl Elongation through a Coincidence Mechanism in Arabidopsis thaliana

(2009) Yusuke Niwa et al.   PLANT AND CELL PHYSIOLOGY

A role for circadian evening elements in cold-regulated gene expression in Arabidopsis

(2009) Michael D. Mikkelsen et al.   PLANT JOURNAL

Genotype and time of day shape thePopulusdrought response

(2009) Olivia Wilkins et al.   PLANT JOURNAL

Impact of clock-associated Arabidopsis pseudo-response regulators in metabolic coordination

(2009) A. Fukushima et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hd3a and RFT1 are essential for flowering in rice

(2008) R. Komiya et al.   DEVELOPMENT

Arabidopsis COP1 shapes the temporal pattern of CO accumulation conferring a photoperiodic flowering response

(2008) Seonghoe Jang et al.   EMBO JOURNAL

A molecular framework for light and gibberellin control of cell elongation

(2008) Miguel de Lucas et al.   NATURE

Coordinated regulation of Arabidopsis thaliana development by light and gibberellins

(2008) Suhua Feng et al.   NATURE

Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice

(2008) Weiya Xue et al.   NATURE GENETICS

Comparative Transcriptome of Diurnally Oscillating Genes and Hormone-Responsive Genes in Arabidopsis thaliana: Insight into Circadian Clock-Controlled Daily Responses to Common Ambient Stresses in Plants

(2008) Takeshi Mizuno et al.   PLANT AND CELL PHYSIOLOGY

Disruption of the Arabidopsis Circadian Clock Is Responsible for Extensive Variation in the Cold-Responsive Transcriptome

(2008) Z. Bieniawska et al.   PLANT PHYSIOLOGY

Network Discovery Pipeline Elucidates Conserved Time-of-Day–Specific cis-Regulatory Modules

(2008) Todd P. Michael et al.   PLoS Genetics

Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1

(2008) R. A. Gutierrez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Photoexcited CRY2 Interacts with CIB1 to Regulate Transcription and Floral Initiation in Arabidopsis

(2008) H. Liu et al.   SCIENCE

Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development

(2008) Michael F Covington et al.   GENOME BIOLOGY

Conserved Daily Transcriptional Programs in Carica papaya

(2008) Anna Zdepski et al.   Tropical Plant Biology

Effects of Feeding Spodoptera littoralis on Lima Bean Leaves: IV. Diurnal and Nocturnal Damage Differentially Initiate Plant Volatile Emission

(2007) G.-i. Arimura et al.   PLANT PHYSIOLOGY