Complete nitrification: insights into the ecophysiology of comammox Nitrospira

Complete ammonia oxidation: an important control on nitrification in engineered ecosystems?

(2018) Christopher E Lawson et al.   CURRENT OPINION IN BIOTECHNOLOGY

Go with the flow or solitary confinement: a look inside the single-cell toolbox for isolation of rare and uncultured microbes

(2018) Geert RB Huys et al.   CURRENT OPINION IN MICROBIOLOGY

Comammox Nitrospira are abundant ammonia oxidizers in diverse groundwater-fed rapid sand filter communities

(2018) Susan Jane Fowler et al.   ENVIRONMENTAL MICROBIOLOGY

The consequences of niche and physiological differentiation of archaeal and bacterial ammonia oxidisers for nitrous oxide emissions

(2018) Linda Hink et al.   ISME Journal

Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox Nitrospira

(2018) Alejandro Palomo et al.   ISME Journal

UBCG: Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction

(2018) Seong-In Na et al.   JOURNAL OF MICROBIOLOGY

The microbial nitrogen-cycling network

(2018) Marcel M. M. Kuypers et al.   NATURE REVIEWS MICROBIOLOGY

Genomic Analysis of Two Phylogenetically Distinct Nitrospira Species Reveals Their Genomic Plasticity and Functional Diversity

(2018) Norisuke Ushiki et al.   Frontiers in Microbiology

Comammox Functionality Identified in Diverse Engineered Biological Wastewater Treatment Systems

(2018) Medini K. Annavajhala et al.   Environmental Science & Technology Letters

Stress response of a marine ammonia-oxidizing archaeon informs physiological status of environmental populations

(2017) Wei Qin et al.   ISME Journal

Capturing the genetic makeup of the active microbiome in situ

(2017) Esther Singer et al.   ISME Journal

Metagenomic binning of a marine sponge microbiome reveals unity in defense but metabolic specialization

(2017) Beate M Slaby et al.   ISME Journal

Integrated metabolism in sponge–microbe symbiosis revealed by genome-centered metatranscriptomics

(2017) Lucas Moitinho-Silva et al.   ISME Journal

Mixotrophy drives niche expansion of verrucomicrobial methanotrophs

(2017) Carlo R Carere et al.   ISME Journal

Nitrite oxidation kinetics of two Nitrospira strains: The quest for competition and ecological niche differentiation

(2017) Norisuke Ushiki et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Comammox—a newly discovered nitrification process in the terrestrial nitrogen cycle

(2017) Hang-Wei Hu et al.   JOURNAL OF SOILS AND SEDIMENTS

Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle

(2017) K. Dimitri Kits et al.   NATURE

Nitric oxide is an obligate bacterial nitrification intermediate produced by hydroxylamine oxidoreductase

(2017) Jonathan D. Caranto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comammox in drinking water systems

(2017) Yulin Wang et al.   WATER RESEARCH

Freshwater Recirculating Aquaculture System Operations Drive Biofilter Bacterial Community Shifts around a Stable Nitrifying Consortium of Ammonia-Oxidizing Archaea and Comammox Nitrospira

(2017) Ryan P. Bartelme et al.   Frontiers in Microbiology

AmoA-Targeted Polymerase Chain Reaction Primers for the Specific Detection and Quantification of Comammox Nitrospira in the Environment

(2017) Petra Pjevac et al.   Frontiers in Microbiology

Adaptability as the key to success for the ubiquitous marine nitrite oxidizer Nitrococcus

(2017) Jessika Füssel et al.   Science Advances

Genome-Enabled Insights into the Ecophysiology of the Comammox Bacterium “ Candidatus Nitrospira nitrosa”

(2017) Pamela Y. Camejo et al.   mSystems

Direct-geneFISH: a simplified protocol for the simultaneous detection and quantification of genes and rRNA in microorganisms

(2016) Jimena Barrero-Canosa et al.   ENVIRONMENTAL MICROBIOLOGY

Metagenomic analysis of rapid gravity sand filter microbial communities suggests novel physiology of Nitrospira spp.

(2016) Alejandro Palomo et al.   ISME Journal

Pathways and key intermediates required for obligate aerobic ammonia-dependent chemolithotrophy in bacteria and Thaumarchaeota

(2016) Jessica A Kozlowski et al.   ISME Journal

Nitrosomonas europaeacytochrome P460 is a direct link between nitrification and nitrous oxide emission

(2016) Jonathan D. Caranto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A New Perspective on Microbes Formerly Known as Nitrite-Oxidizing Bacteria

(2016) Holger Daims et al.   TRENDS IN MICROBIOLOGY

Inhabitancy of active Nitrosopumilus-like ammonia-oxidizing archaea and Nitrospira nitrite-oxidizing bacteria in the sponge Theonella swinhoei

(2016) Guofang Feng et al.   Scientific Reports

Comparison of Nitrogen Oxide Metabolism among Diverse Ammonia-Oxidizing Bacteria

(2016) Jessica A. Kozlowski et al.   Frontiers in Microbiology

Ecophysiology and Comparative Genomics of Nitrosomonas mobilis Ms1 Isolated from Autotrophic Nitrifying Granules of Wastewater Treatment Bioreactor

(2016) Soe Myat Thandar et al.   Frontiers in Microbiology

Distribution, Sources, and Sinks of Cyanate in the Coastal North Atlantic Ocean

(2016) Brittany Widner et al.   Environmental Science & Technology Letters

Cyanate as an energy source for nitrifiers

(2015) Marton Palatinszky et al.   NATURE

Complete nitrification by a single microorganism

(2015) Maartje A. H. J. van Kessel et al.   NATURE

Complete nitrification by Nitrospira bacteria

(2015) Holger Daims et al.   NATURE

Expanded metabolic versatility of ubiquitous nitrite-oxidizing bacteria from the genusNitrospira

(2015) Hanna Koch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparison of Oxidation Kinetics of Nitrite-Oxidizing Bacteria: Nitrite Availability as a Key Factor in Niche Differentiation

(2014) Boris Nowka et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Switching substrate specificity of AMT/MEP/ Rh proteins

(2014) Benjamin Neuhäuser et al.   Channels

Functionally relevant diversity of closely related Nitrospira in activated sludge

(2014) Christiane Gruber-Dorninger et al.   ISME Journal

Interactions between Thaumarchaea, Nitrospira and methanotrophs modulate autotrophic nitrification in volcanic grassland soil

(2014) Anne Daebeler et al.   ISME Journal

Aerobic nitrous oxide production through N-nitrosating hybrid formation in ammonia-oxidizing archaea

(2014) Michaela Stieglmeier et al.   ISME Journal

An obligately aerobic soil bacterium activates fermentative hydrogen production to survive reductive stress during hypoxia

(2014) M. Berney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ammonia-oxidizing archaea use the most energy-efficient aerobic pathway for CO2 fixation

(2014) M. Konneke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Growth of nitrite-oxidizing bacteria by aerobic hydrogen oxidation

(2014) H. Koch et al.   SCIENCE

Variability of the transporter gene complement in ammonia-oxidizing archaea

(2014) Pierre Offre et al.   TRENDS IN MICROBIOLOGY

Chromatographic Determination of Nanomolar Cyanate Concentrations in Estuarine and Sea Waters by Precolumn Fluorescence Derivatization

(2013) Brittany Widner et al.   ANALYTICAL CHEMISTRY

Isolation of sublineage I Nitrospiraby a novel cultivation strategy

(2013) Hirotsugu Fujitani et al.   ENVIRONMENTAL MICROBIOLOGY

Three different [NiFe] hydrogenases confer metabolic flexibility in the obligate aerobeMycobacterium smegmatis

(2013) Michael Berney et al.   ENVIRONMENTAL MICROBIOLOGY

Biosynthesis of the Urease Metallocenter

(2013) Mark A. Farrugia et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Isolation of Nitrospira belonging to Sublineage II from a Wastewater Treatment Plant

(2013) Norisuke Ushiki et al.   MICROBES AND ENVIRONMENTS

The Genome of Nitrospina gracilis Illuminates the Metabolism and Evolution of the Major Marine Nitrite Oxidizer

(2013) Sebastian Lücker et al.   Frontiers in Microbiology

Diversity, Physiology, and Niche Differentiation of Ammonia-Oxidizing Archaea

(2012) Roland Hatzenpichler   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Urease gene-containingArchaeadominate autotrophic ammonia oxidation in two acid soils

(2012) Lu Lu et al.   ENVIRONMENTAL MICROBIOLOGY

The Divergent AmoC3 Subunit of Ammonia Monooxygenase Functions as Part of a Stress Response System in Nitrosomonas europaea

(2012) P. M. Berube et al.   JOURNAL OF BACTERIOLOGY

Role for urea in nitrification by polar marine Archaea

(2012) L. Alonso-Saez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation

(2012) James I. Prosser et al.   TRENDS IN MICROBIOLOGY

Predicting microbial nitrogen pathways from basic principles

(2011) Ingrid A. van de Leemput et al.   ENVIRONMENTAL MICROBIOLOGY

The cyanate utilization capacity of marine unicellular Cyanobacteria

(2010) Nina A. Kamennaya et al.   LIMNOLOGY AND OCEANOGRAPHY

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

(2010) S. Lucker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria

(2009) Willm Martens-Habbena et al.   NATURE

Characterization of the Pseudomonas pseudoalcaligenes CECT5344 Cyanase, an Enzyme That Is Not Essential for Cyanide Assimilation

(2008) V. M. Luque-Almagro et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evolution of an octahaem cytochromecprotein family that is key to aerobic and anaerobic ammonia oxidation by bacteria

(2008) Martin G. Klotz et al.   ENVIRONMENTAL MICROBIOLOGY

Nitrifier genomics and evolution of the nitrogen cycle

(2007) Martin G. Klotz et al.   FEMS MICROBIOLOGY LETTERS