Freshwater Recirculating Aquaculture System Operations Drive Biofilter Bacterial Community Shifts around a Stable Nitrifying Consortium of Ammonia-Oxidizing Archaea and Comammox Nitrospira

Effects of Bacterial Community Members on the Proteome of the Ammonia-Oxidizing Bacterium Nitrosomonas sp. Strain Is79

(2016) Christopher J. Sedlacek et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Relative Abundance of Nitrotoga spp. in a Biofilter of a Cold-Freshwater Aquaculture Plant Appears To Be Stimulated by Slightly Acidic pH

(2016) Jennifer Hüpeden et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Uncultured bacterial diversity in a seawater recirculating aquaculture system revealed by 16S rRNA gene amplicon sequencing

(2016) Da-Eun Lee et al.   JOURNAL OF MICROBIOLOGY

A New Perspective on Microbes Formerly Known as Nitrite-Oxidizing Bacteria

(2016) Holger Daims et al.   TRENDS IN MICROBIOLOGY

Branchial nitrogen cycle symbionts can remove ammonia in fish gills

(2016) Maartje A.H.J. van Kessel et al.   Environmental Microbiology Reports

Complete nitrification by a single microorganism

(2015) Maartje A. H. J. van Kessel et al.   NATURE

Complete nitrification by Nitrospira bacteria

(2015) Holger Daims et al.   NATURE

Sewage Reflects the Microbiomes of Human Populations

(2015) Ryan J. Newton et al.   mBio

Metagenomic Evidence for the Presence of Comammox Nitrospira -Like Bacteria in a Drinking Water System

(2015) Ameet J. Pinto et al.   mSphere

Urban microbial ecology of a freshwater estuary of Lake Michigan

(2015) Jenny C. Fisher et al.   Elementa-Science of the Anthropocene

Comparison of Oxidation Kinetics of Nitrite-Oxidizing Bacteria: Nitrite Availability as a Key Factor in Niche Differentiation

(2014) Boris Nowka et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

VAMPS: a website for visualization and analysis of microbial population structures

(2014) Susan M Huse et al.   BMC BIOINFORMATICS

Ecological theory as a foundation to control pathogenic invasion in aquaculture

(2014) Peter De Schryver et al.   ISME Journal

Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences

(2014) A Murat Eren et al.   ISME Journal

Analysis, Optimization and Verification of Illumina-Generated 16S rRNA Gene Amplicon Surveys

(2014) Michael C. Nelson et al.   PLoS One

Temporal and Spatial Stability of Ammonia-Oxidizing Archaea and Bacteria in Aquarium Biofilters

(2014) Samik Bagchi et al.   PLoS One

Impacts of climate change on marine ecosystem production in societies dependent on fisheries

(2014) M. Barange et al.   Nature Climate Change

Comparison of brush and biopsy sampling methods of the ileal pouch for assessment of mucosa-associated microbiota of human subjects

(2014) Susan M Huse et al.   Microbiome

C/N ratio-induced structural shift of bacterial communities inside lab-scale aquaculture biofilters

(2013) Luigi Michaud et al.   AQUACULTURAL ENGINEERING

NxrBencoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizingNitrospira

(2013) Michael Pester et al.   ENVIRONMENTAL MICROBIOLOGY

Correction: A Filtering Method to Generate High Quality Short Reads Using Illumina Paired-End Technology

(2013) A. Murat Eren et al.   PLoS One

Relevance and Diversity of Nitrospira Populations in Biofilters of Brackish RAS

(2013) Myriam Kruse et al.   PLoS One

Microbiological characterization of post-eruption “snowblower” vents at Axial Seamount, Juan de Fuca Ridge

(2013) Julie L. Meyer et al.   Frontiers in Microbiology

Searching for Solutions in Aquaculture: Charting a Sustainable Course

(2012) Dane Klinger et al.   Annual Review of Environment and Resources

Diversity, Physiology, and Niche Differentiation of Ammonia-Oxidizing Archaea

(2012) Roland Hatzenpichler   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Recirculating Aquaculture Systems (RAS) analysis: Main issues on management and future challenges

(2012) Maddi Badiola et al.   AQUACULTURAL ENGINEERING

Insight into bacterial population in aquaculture systems and its implication

(2012) J.P. Blancheton et al.   AQUACULTURAL ENGINEERING

Ammonia-oxidizing archaea and nitrite-oxidizing nitrospiras in the biofilter of a shrimp recirculating aquaculture system

(2012) Monisha N. Brown et al.   FEMS MICROBIOLOGY ECOLOGY

Impact of water quality on the bacterial populations and off-flavours in recirculating aquaculture systems

(2012) Marc Auffret et al.   FEMS MICROBIOLOGY ECOLOGY

Phylogenetic diversity of ammonia-oxidizing archaea and bacteria in biofilters of recirculating aquaculture systems

(2012) Tomoko Sakami et al.   Marine Genomics

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

High-Throughput Analysis of Ammonia Oxidiser Community Composition via a Novel, amoA-Based Functional Gene Array

(2012) Guy C. J. Abell et al.   PLoS One

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Abundance, Diversity, and Activity of Ammonia-Oxidizing Prokaryotes in the Coastal Arctic Ocean in Summer and Winter

(2011) Glenn D. Christman et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity and enrichment of nitrite-dependent anaerobic methane oxidizing bacteria from wastewater sludge

(2011) Francisca A. Luesken et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology

(2011) Michael Pester et al.   CURRENT OPINION IN MICROBIOLOGY

amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions

(2011) Michael Pester et al.   ENVIRONMENTAL MICROBIOLOGY

Aquarium Nitrification Revisited: Thaumarchaeota Are the Dominant Ammonia Oxidizers in Freshwater Aquarium Biofilters

(2011) Laura A. Sauder et al.   PLoS One

Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers

(2011) M. Mussmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evaluation of nitrifying bacteria product to improve nitrification efficacy in recirculating aquaculture systems

(2010) David D. Kuhn et al.   AQUACULTURAL ENGINEERING

New developments in recirculating aquaculture systems in Europe: A perspective on environmental sustainability

(2010) C.I.M. Martins et al.   AQUACULTURAL ENGINEERING

Biodiversity of N-cycle bacteria in nitrogen removing moving bed biofilters for freshwater recirculating aquaculture systems

(2010) Maartje A.H.J. van Kessel et al.   AQUACULTURE

Microbial diversity of biological filters in recirculating aquaculture systems

(2010) Harold J Schreier et al.   CURRENT OPINION IN BIOTECHNOLOGY

Development and application of a PCR-denaturing gradient gel electrophoresis tool to study the diversity of Nitrobacter-like nxrA sequences in soil

(2009) Sophie Wertz et al.   FEMS MICROBIOLOGY ECOLOGY

Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms

(2008) Maria Tourna et al.   ENVIRONMENTAL MICROBIOLOGY

Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing

(2008) Susan M. Huse et al.   PLoS Genetics