Inhabitancy of active Nitrosopumilus-like ammonia-oxidizing archaea and Nitrospira nitrite-oxidizing bacteria in the sponge Theonella swinhoei

Similar sponge-associated bacteria can be acquired via both vertical and horizontal transmission

(2015) Detmer Sipkema et al.   ENVIRONMENTAL MICROBIOLOGY

Composition and Predictive Functional Analysis of Bacterial Communities in Seawater, Sediment and Sponges in the Spermonde Archipelago, Indonesia

(2015) Daniel F. R. Cleary et al.   MICROBIAL ECOLOGY

The putative functional ecology and distribution of archaeal communities in sponges, sediment and seawater in a coral reef environment

(2015) Ana R. M. Polónia et al.   MOLECULAR ECOLOGY

Shifts in the meso- and bathypelagic archaea communities composition during recovery and short-term handling of decompressed deep-sea samples

(2015) Violetta La Cono et al.   Environmental Microbiology Reports

High-Throughput Metagenomic Technologies for Complex Microbial Community Analysis: Open and Closed Formats

(2015) Jizhong Zhou et al.   mBio

Transcriptional activity of the giant barrel sponge, Xestospongia muta Holobiont: molecular evidence for metabolic interchange

(2015) Cara L. Fiore et al.   Frontiers in Microbiology

Characterization of Bacterial, Archaeal and Eukaryote Symbionts from Antarctic Sponges Reveals a High Diversity at a Three-Domain Level and a Particular Signature for This Ecosystem

(2015) Susana Rodríguez-Marconi et al.   PLoS One

Sedimentary archaeal amoA gene abundance reflects historic nutrient level and salinity fluctuations in Qinghai Lake, Tibetan Plateau

(2015) Jian Yang et al.   Scientific Reports

Giving the early fossil record of sponges a squeeze

(2014) Jonathan B. Antcliffe et al.   BIOLOGICAL REVIEWS

Revealing microbial functional activities in the Red Sea spongeStylissa carteriby metatranscriptomics

(2014) Lucas Moitinho-Silva et al.   ENVIRONMENTAL MICROBIOLOGY

Host-specificity among abundant and rare taxa in the sponge microbiome

(2014) Julie Reveillaud et al.   ISME Journal

Diversity and activity of marine bacterioplankton during a diatom bloom in the North Sea assessed by total RNA and pyrotag sequencing

(2014) Anna Klindworth et al.   Marine Genomics

An environmental bacterial taxon with a large and distinct metabolic repertoire

(2014) Micheal C. Wilson et al.   NATURE

Metabolic profiles of prokaryotic and eukaryotic communities in deep-sea sponge Neamphius huxleyi indicated by metagenomics

(2014) Zhi-Yong Li et al.   Scientific Reports

The role of macrobiota in structuring microbial communities along rocky shores

(2014) Catherine A. Pfister et al.   PeerJ

NxrBencoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizingNitrospira

(2013) Michael Pester et al.   ENVIRONMENTAL MICROBIOLOGY

Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses

(2013) Steven J Blazewicz et al.   ISME Journal

Marine microbial symbiosis heats up: the phylogenetic and functional response of a sponge holobiont to thermal stress

(2013) Lu Fan et al.   ISME Journal

Building Phylogenetic Trees from Molecular Data with MEGA

(2013) B. G. Hall   MOLECULAR BIOLOGY AND EVOLUTION

Sequence assembly demystified

(2013) Niranjan Nagarajan et al.   NATURE REVIEWS GENETICS

Phylogenetically Diverse ureC Genes and Their Expression Suggest the Urea Utilization by Bacterial Symbionts in Marine Sponge Xestospongia testudinaria

(2013) Jing Su et al.   PLoS One

Capturing Greater 16S rRNA Gene Sequence Diversity within the Domain Bacteria

(2012) T. Winsley et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Thermal stress responses in the bacterial biosphere of the Great Barrier Reef sponge,Rhopaloeides odorabile

(2012) Rachel Simister et al.   ENVIRONMENTAL MICROBIOLOGY

Metatranscriptomics of the marine sponge Geodia barretti: tackling phylogeny and function of its microbial community

(2012) Regina Radax et al.   ENVIRONMENTAL MICROBIOLOGY

Quantification of ammonia oxidation rates and ammonia-oxidizing archaea and bacteria at high resolution in the Gulf of California and eastern tropical North Pacific Ocean

(2012) J. Michael Beman et al.   LIMNOLOGY AND OCEANOGRAPHY

Genomic insights into the marine sponge microbiome

(2012) Ute Hentschel et al.   NATURE REVIEWS MICROBIOLOGY

DECIPHER, a Search-Based Approach to Chimera Identification for 16S rRNA Sequences

(2011) Erik S. Wright et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ammonia-oxidizing archaea as main drivers of nitrification in cold-water sponges

(2011) Regina Radax et al.   ENVIRONMENTAL MICROBIOLOGY

Nitrite oxidation in the Namibian oxygen minimum zone

(2011) Jessika Füssel et al.   ISME Journal

New Approach Using the Real-Time PCR Method for Estimation of the Toxic Marine Dinoflagellate Ostreopsis cf. ovata in Marine Environment

(2011) Federico Perini et al.   PLoS One

Nitrogen Cycle of the Open Ocean: From Genes to Ecosystems

(2010) Jonathan P. Zehr et al.   Annual Review of Marine Science

Enrichment and Physiological Characterization of a Novel Nitrospira-Like Bacterium Obtained from a Marine Sponge

(2010) S. Off et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Activity profiles for marine sponge-associated bacteria obtained by 16S rRNA vs 16S rRNA gene comparisons

(2010) Janine Kamke et al.   ISME Journal

Novel primers for 16S rRNA-based archaeal community analyses in environmental samples

(2010) Stephan Gantner et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Effects of Sponge Bleaching on Ammonia-Oxidizing Archaea: Distribution and Relative Expression of Ammonia Monooxygenase Genes Associated with the Barrel Sponge Xestospongia muta

(2010) Susanna López-Legentil et al.   MICROBIAL ECOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Development and application of a PCR-denaturing gradient gel electrophoresis tool to study the diversity of Nitrobacter-like nxrA sequences in soil

(2009) Sophie Wertz et al.   FEMS MICROBIOLOGY ECOLOGY

Diversity of aerobic and anaerobic ammonia-oxidizing bacteria in marine sponges

(2009) Naglaa M Mohamed et al.   ISME Journal

Physiology, phylogeny andin situevidence for bacterial and archaeal nitrifiers in the marine spongeAplysina aerophoba

(2008) Kristina Bayer et al.   ENVIRONMENTAL MICROBIOLOGY

Community composition of ammonia-oxidizing bacteria and archaea in soils under stands of red alder and Douglas fir in Oregon

(2008) Stephanie A. Boyle-Yarwood et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity and expression of nitrogen fixation genes in bacterial symbionts of marine sponges

(2008) Naglaa M. Mohamed et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity and mode of transmission of ammonia-oxidizing archaea in marine sponges

(2008) Doris Steger et al.   ENVIRONMENTAL MICROBIOLOGY

Presence and activity of anaerobic ammonium-oxidizing bacteria at deep-sea hydrothermal vents

(2008) Nathalie Byrne et al.   ISME Journal

Cryptic diversity of the symbiotic cyanobacterium Synechococcus spongiarum among sponge hosts

(2008) PATRICK M. ERWIN et al.   MOLECULAR ECOLOGY