Understanding development and ripening of fruit crops in an ‘omics’ era

The transcription factor AREB1 regulates primary metabolic pathways in tomato fruits

(2014) Adriana Bastías et al.   JOURNAL OF EXPERIMENTAL BOTANY

iTRAQ Protein Profile Analysis of Tomato Green-ripe Mutant Reveals New Aspects Critical for Fruit Ripening

(2014) Xiaoqi Pan et al.   JOURNAL OF PROTEOME RESEARCH

Towards an improved apple reference transcriptome using RNA-seq

(2014) Yang Bai et al.   MOLECULAR GENETICS AND GENOMICS

Transcriptional Regulation of Fruit Ripening by Tomato FRUITFULL Homologs and Associated MADS Box Proteins

(2014) M. Fujisawa et al.   PLANT CELL

Tomato GOLDEN2-LIKE Transcription Factors Reveal Molecular Gradients That Function during Fruit Development and Ripening

(2014) C. V. Nguyen et al.   PLANT CELL

The Draft Genome Sequence of European Pear (Pyrus communis L. ‘Bartlett’)

(2014) David Chagné et al.   PLoS One

Metabolomics analysis of postharvest ripening heterogeneity of ‘Hass’ avocadoes

(2014) Romina Pedreschi et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization

(2014) C. Qin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamic changes in proteins during apple (Malus x domestica) fruit ripening and storage

(2014) Yun Shi et al.   Horticulture Research

Transcriptional dynamics of the developing sweet cherry (Prunus avium L.) fruit: sequencing, annotation and expression profiling of exocarp-associated genes

(2014) Merianne Alkio et al.   Horticulture Research

Fruit Development and Ripening

(2013) Graham B. Seymour et al.   Annual Review of Plant Biology

iTRAQ-Based Quantitative Proteomics of Developing and Ripening Muscadine Grape Berry

(2013) Devaiah Kambiranda et al.   JOURNAL OF PROTEOME RESEARCH

A proteomic investigation of apple fruit during ripening and in response to ethylene treatment

(2013) Qifa Zheng et al.   Journal of Proteomics

Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening

(2013) Silin Zhong et al.   NATURE BIOTECHNOLOGY

The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution

(2013) Ignazio Verde et al.   NATURE GENETICS

The Plant Science Decadal Vision

(2013) C. Martin   PLANT CELL

Molecular and genetic regulation of fruit ripening

(2013) Nigel E. Gapper et al.   PLANT MOLECULAR BIOLOGY

Conserved Changes in the Dynamics of Metabolic Processes during Fruit Development and Ripening across Species

(2013) S. Klie et al.   PLANT PHYSIOLOGY

The First 50 Plant Genomes

(2013) Todd P. Michael et al.   Plant Genome

Distribution of MdACS3 null alleles in apple (Malus × domestica Borkh.) and its relevance to the fruit ripening characters

(2012) Songling Bai et al.   BREEDING SCIENCE

The genome of the pear (Pyrus bretschneideri Rehd.)

(2012) J. Wu et al.   GENOME RESEARCH

2D-DIGE analysis of mango (Mangifera indica L.) fruit reveals major proteomic changes associated with ripening

(2012) Jonathan de Magalhães Andrade et al.   Journal of Proteomics

Proteomic analysis of apricot fruit during ripening

(2012) Chiara D'Ambrosio et al.   Journal of Proteomics

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

(2012) Angélique D’Hont et al.   NATURE

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions

(2012) Shaogui Guo et al.   NATURE GENETICS

The Tomato FRUITFULL Homologs TDR4/FUL1 and MBP7/FUL2 Regulate Ethylene-Independent Aspects of Fruit Ripening

(2012) M. Bemer et al.   PLANT CELL

A MicroRNA Superfamily Regulates Nucleotide Binding Site-Leucine-Rich Repeats and Other mRNAs

(2012) P. V. Shivaprasad et al.   PLANT CELL

Advances in plant genome sequencing

(2012) John P. Hamilton et al.   PLANT JOURNAL

AppleSEPALLATA1/2-like genes control fruit flesh development and ripening

(2012) Hilary S. Ireland et al.   PLANT JOURNAL

Ligand-Induced Alterations in the Phosphorylation State of Ethylene Receptors in Tomato Fruit

(2012) Y. Kamiyoshihara et al.   PLANT PHYSIOLOGY

Integrative Comparative Analyses of Transcript and Metabolite Profiles from Pepper and Tomato Ripening and Development Stages Uncovers Species-Specific Patterns of Network Regulatory Behavior

(2012) S. Osorio et al.   PLANT PHYSIOLOGY

The genome of melon (Cucumis melo L.)

(2012) J. Garcia-Mas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Uniform ripening Encodes a Golden 2-like Transcription Factor Regulating Tomato Fruit Chloroplast Development

(2012) A. L. T. Powell et al.   SCIENCE

The genome of Prunus mume

(2012) Qixiang Zhang et al.   Nature Communications

Genetics and Control of Tomato Fruit Ripening and Quality Attributes

(2011) Harry J. Klee et al.   Annual Review of Genetics

Dissecting the role of climacteric ethylene in kiwifruit (Actinidia chinensis) ripening using a 1-aminocyclopropane-1-carboxylic acid oxidase knockdown line

(2011) Ross G. Atkinson et al.   JOURNAL OF EXPERIMENTAL BOTANY

Proteomics as an approach to the understanding of the molecular physiology of fruit development and ripening

(2011) José M. Palma et al.   Journal of Proteomics

Assessment of Prunus persica fruit softening using a proteomics approach

(2011) Ricardo Nilo P. et al.   Journal of Proteomics

Proteomic analysis of papaya fruit ripening using 2DE-DIGE

(2011) Silvia Beserra Nogueira et al.   Journal of Proteomics

De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera)

(2011) Eman K Al-Dous et al.   NATURE BIOTECHNOLOGY

Extensive metabolic cross-talk in melon fruit revealed by spatial and developmental combinatorial metabolomics

(2011) Annick Moing et al.   NEW PHYTOLOGIST

Peach fruit ripening: A proteomic comparative analysis of the mesocarp of two cultivars with different flesh firmness at two ripening stages

(2011) Bhakti Prinsi et al.   PHYTOCHEMISTRY

Transcriptome and Metabolite Profiling Show That APETALA2a Is a Major Regulator of Tomato Fruit Ripening

(2011) R. Karlova et al.   PLANT CELL

Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns

(2011) Irina Mohorianu et al.   PLANT JOURNAL

Combined transcriptome, genetic diversity and metabolite profiling in tomato fruit reveals that the ethylene response factor SlERF6 plays an important role in ripening and carotenoid accumulation

(2011) Je Min Lee et al.   PLANT JOURNAL

The Tomato MADS-Box Transcription Factor RIPENING INHIBITOR Interacts with Promoters Involved in Numerous Ripening Processes in a COLORLESS NONRIPENING-Dependent Manner

(2011) C. Martel et al.   PLANT PHYSIOLOGY

Systems Biology of Tomato Fruit Development: Combined Transcript, Protein, and Metabolite Analysis of Tomato Transcription Factor ( nor, rin ) and Ethylene Receptor ( Nr ) Mutants Reveals Novel Regulatory Interactions

(2011) Sonia Osorio et al.   PLANT PHYSIOLOGY

Metabolic Profiling during Peach Fruit Development and Ripening Reveals the Metabolic Networks That Underpin Each Developmental Stage

(2011) V. A. Lombardo et al.   PLANT PHYSIOLOGY

The Genome Sequence of the North-European Cucumber (Cucumis sativus L.) Unravels Evolutionary Adaptation Mechanisms in Plants

(2011) Rafał Wóycicki et al.   PLoS One

Metabolic characterization of tomato fruit during preharvest development, ripening, and postharvest shelf-life

(2011) Gemma Oms-Oliu et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Genomic resources in horticultural crops: Status, utility and challenges

(2010) Humira Sonah et al.   BIOTECHNOLOGY ADVANCES

Mining the surface proteome of tomato (Solanum lycopersicum) fruit for proteins associated with cuticle biogenesis

(2010) Trevor H. Yeats et al.   JOURNAL OF EXPERIMENTAL BOTANY

The regulation of MADS-box gene expression during ripening of banana and their regulatory interaction with ethylene

(2010) Tomer Elitzur et al.   JOURNAL OF EXPERIMENTAL BOTANY

A SEPALLATA gene is involved in the development and ripening of strawberry (Fragaria×ananassa Duch.) fruit, a non-climacteric tissue*

(2010) Graham B. Seymour et al.   JOURNAL OF EXPERIMENTAL BOTANY

Functional diversification of AGAMOUS lineage genes in regulating tomato flower and fruit development

(2010) I. L. Pan et al.   JOURNAL OF EXPERIMENTAL BOTANY

The genome of woodland strawberry (Fragaria vesca)

(2010) Vladimir Shulaev et al.   NATURE GENETICS

The genome of the domesticated apple (Malus × domestica Borkh.)

(2010) Riccardo Velasco et al.   NATURE GENETICS

The transcription factor SlAREB1 confers drought, salt stress tolerance and regulates biotic and abiotic stress-related genes in tomato

(2010) SANDRA ORELLANA et al.   PLANT CELL AND ENVIRONMENT

A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening

(2010) Mi-Young Chung et al.   PLANT JOURNAL

A SQUAMOSA MADS Box Gene Involved in the Regulation of Anthocyanin Accumulation in Bilberry Fruits

(2010) L. Jaakola et al.   PLANT PHYSIOLOGY

The Role of Ethylene and Cold Temperature in the Regulation of the Apple POLYGALACTURONASE1 Gene and Fruit Softening

(2010) E. Tacken et al.   PLANT PHYSIOLOGY

Protein and peptide fractionation, enrichment and depletion: Tools for the complex proteome

(2010) Linda Ly et al.   PROTEOMICS

Crop genome sequencing: lessons and rationales

(2010) Catherine Feuillet et al.   TRENDS IN PLANT SCIENCE

Generation of a predicted protein database from EST data and application to iTRAQ analyses in grape (Vitis vinifera cv. Cabernet Sauvignon) berries at ripening initiation

(2009) Joost Lucker et al.   BMC GENOMICS

Mass spectrometry-based clinical proteomics profiling: current status and future directions

(2009) Peter Findeisen et al.   Expert Review of Proteomics

Metabolomic Change Precedes Apple Superficial Scald Symptoms

(2009) David R. Rudell et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Silencing Sl-EBF1 and Sl-EBF2 expression causes constitutive ethylene response phenotype, accelerated plant senescence, and fruit ripening in tomato

(2009) Y. Yang et al.   JOURNAL OF EXPERIMENTAL BOTANY

A PLENA-like gene of peach is involved in carpel formation and subsequent transformation into a fleshy fruit

(2009) Alice Tadiello et al.   JOURNAL OF EXPERIMENTAL BOTANY

Recent advances in ethylene research

(2009) Z. Lin et al.   JOURNAL OF EXPERIMENTAL BOTANY

The genome of the cucumber, Cucumis sativus L.

(2009) Sanwen Huang et al.   NATURE GENETICS

Fleshy Fruit Expansion and Ripening Are Regulated by the Tomato SHATTERPROOF Gene TAGL1

(2009) J. Vrebalov et al.   PLANT CELL

TOMATO AGAMOUS-LIKE 1 is a component of the fruit ripening regulatory network

(2009) Maxim Itkin et al.   PLANT JOURNAL

Null Mutation of the MdACS3 Gene, Coding for a Ripening-Specific 1-Aminocyclopropane-1-Carboxylate Synthase, Leads to Long Shelf Life in Apple Fruit

(2009) A. Wang et al.   PLANT PHYSIOLOGY

Proteome changes in the skin of the grape cultivar Barbera among different stages of ripening

(2008) Alfredo S Negri et al.   BMC GENOMICS

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

(2008) S. Moxon et al.   GENOME RESEARCH

Tomato ethylene receptor–CTR interactions: visualization of NEVER-RIPE interactions with multiple CTRs at the endoplasmic reticulum

(2008) Silin Zhong et al.   JOURNAL OF EXPERIMENTAL BOTANY

SlTPR1, a tomato tetratricopeptide repeat protein, interacts with the ethylene receptors NR and LeETR1, modulating ethylene and auxin responses and development

(2008) Zhefeng Lin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Strawberry proteome characterization and its regulation during fruit ripening and in different genotypes

(2008) Linda Bianco et al.   Journal of Proteomics

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)

(2008) Ray Ming et al.   NATURE

Fruit-specific suppression of the ethylene receptor LeETR4 results in early-ripening tomato fruit

(2008) Brian M. Kevany et al.   PLANT BIOTECHNOLOGY JOURNAL

A tomato HD-Zip homeobox protein, LeHB-1, plays an important role in floral organogenesis and ripening

(2008) Zhefeng Lin et al.   PLANT JOURNAL

Characterization of cultivar differences in alcohol acyltransferase and 1-aminocyclopropane-1-carboxylate synthase gene expression and volatile ester emission during apple fruit maturation and ripening

(2008) Yanmin Zhu et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Metabolic profiling of ‘Conference’ pears under low oxygen stress

(2008) Romina Pedreschi et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY