The Genome Sequence of the North-European Cucumber (Cucumis sativus L.) Unravels Evolutionary Adaptation Mechanisms in Plants

Large duplications at reciprocal translocation breakpoints that might be the counterpart of large deletions and could arise from stalled replication bubbles

(2011) K. D. Howarth et al.   GENOME RESEARCH

Comparison of the distribution of the repetitive DNA sequences in three variants of Cucumis sativus reveals their phylogenetic relationships

(2011) Xin Zhao et al.   Journal of Genetics and Genomics

Mechanistic Basis of Resistance to PCBs in Atlantic Tomcod from the Hudson River

(2011) I. Wirgin et al.   SCIENCE

Chromosomal evolution in the plant family Solanaceae

(2010) Feinan Wu et al.   BMC GENOMICS

Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.)

(2010) Pablo F Cavagnaro et al.   BMC GENOMICS

A Human Genome Structural Variation Sequencing Resource Reveals Insights into Mutational Mechanisms

(2010) Jeffrey M. Kidd et al.   CELL

Assembly of large genomes using second-generation sequencing

(2010) M. C. Schatz et al.   GENOME RESEARCH

Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor

(2010) R. A. Swanson-Wagner et al.   GENOME RESEARCH

Continuous UV-B Irradiation Induces Endoreduplication and Peroxidase Activity in Epidermal Cells Surrounding Trichomes on Cucumber Cotyledons

(2010) Seiji YAMASAKI et al.   JOURNAL OF RADIATION RESEARCH

The genome of Theobroma cacao

(2010) Xavier Argout et al.   NATURE GENETICS

The genome of woodland strawberry (Fragaria vesca)

(2010) Vladimir Shulaev et al.   NATURE GENETICS

Natural Variation of Transcriptional Auxin Response Networks in Arabidopsis thaliana

(2010) C. Delker et al.   PLANT CELL

Evidence for Light Wavelength-Specific Photoelectrophysiological Signaling and Memory of Excess Light Episodes in Arabidopsis

(2010) M. Szechynska-Hebda et al.   PLANT CELL

Cucumber (Cucumis sativus) and melon (C. melo) have numerous wild relatives in Asia and Australia, and the sister species of melon is from Australia

(2010) P. Sebastian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Variation in Transcription Factor Binding Among Humans

(2010) M. Kasowski et al.   SCIENCE

Five-Vertebrate ChIP-seq Reveals the Evolutionary Dynamics of Transcription Factor Binding

(2010) D. Schmidt et al.   SCIENCE

Carbon Dioxide Enrichment Inhibits Nitrate Assimilation in Wheat and Arabidopsis

(2010) A. J. Bloom et al.   SCIENCE

Conserved expression without conserved regulatory sequence: the more things change, the more they stay the same

(2010) Matthew T. Weirauch et al.   TRENDS IN GENETICS

Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis

(2010) Rami A. Dalloul et al.   PLOS BIOLOGY

GENETACK: FRAMESHIFT IDENTIFICATION IN PROTEIN-CODING SEQUENCES BY THE VITERBI ALGORITHM

(2010) IVAN ANTONOV et al.   Journal of Bioinformatics and Computational Biology

High throughput sequencing in mice: a platform comparison identifies a preponderance of cryptic SNPs

(2009) Nicole AR Walter et al.   BMC GENOMICS

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

(2009) Eli Meyer et al.   BMC GENOMICS

Identification of an extensive gene cluster among a family of PPOs in Trifolium pratense L. (red clover) using a large insert BAC library

(2009) Ana Winters et al.   BMC PLANT BIOLOGY

The genome of the cucumber, Cucumis sativus L.

(2009) Sanwen Huang et al.   NATURE GENETICS

Cucumber chloroplast genome tiling microarray for light stress response analyses

(2009) W. Plader et al.   New Biotechnology

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

PlnTFDB: updated content and new features of the plant transcription factor database

(2009) Paulino Pérez-Rodríguez et al.   NUCLEIC ACIDS RESEARCH

Chromosomal Rearrangements between Serotype A and D Strains in Cryptococcus neoformans

(2009) Sheng Sun et al.   PLoS One

An Integrated Genetic and Cytogenetic Map of the Cucumber Genome

(2009) Yi Ren et al.   PLoS One

Rapid evolution of promoters for the plastome gene ndhF in flowering plants

(2009) A. V. Seliverstov et al.   RUSSIAN JOURNAL OF PLANT PHYSIOLOGY

De Novo Next Generation Sequencing of Plant Genomes

(2009) Steve Rounsley et al.   Rice

De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data

(2009) Scott DiGuistini et al.   GENOME BIOLOGY

Whole genome sequencing of a single Bos taurus animal for single nucleotide polymorphism discovery

(2009) Sebastian H Eck et al.   GENOME BIOLOGY

Aggressive assembly of pyrosequencing reads with mates

(2008) Jason R. Miller et al.   BIOINFORMATICS

Assessing the feasibility of GS FLX Pyrosequencing for sequencing the Atlantic salmon genome

(2008) Nicole L Quinn et al.   BMC GENOMICS

LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana

(2008) Michaela Hundertmark et al.   BMC GENOMICS

MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences

(2008) S. Kumar et al.   BRIEFINGS IN BIOINFORMATICS

The ABA receptors – we report you decide

(2008) Peter McCourt et al.   CURRENT OPINION IN PLANT BIOLOGY

Distribution of the tandem repeat sequences and karyotyping in cucumber (Cucumis sativus L.) by fluorescence in situ hybridization

(2008) Y.H. Han et al.   CYTOGENETIC AND GENOME RESEARCH

De novoassembly of thePseudomonas syringaepv.syringaeB728a genome using Illumina/Solexa short sequence reads

(2008) Rhys A. Farrer et al.   FEMS MICROBIOLOGY LETTERS

Cucumber, melon, pumpkin, and squash: Are rules of editing in flowering plants chloroplast genes so well known indeed?

(2008) Magdalena Guzowska-Nowowiejska et al.   GENE

Rapidly developing functional genomics in ecological model systems via 454 transcriptome sequencing

(2008) Christopher W. Wheat   GENETICA

A BAC library of Beta vulgaris L. for the targeted isolation of centromeric DNA and molecular cytogenetics of Beta species

(2008) Gunnar Jacobs et al.   GENETICA

Sequencing of natural strains of Arabidopsis thaliana with short reads

(2008) S. Ossowski et al.   GENOME RESEARCH

De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae

(2008) J. A. Reinhardt et al.   GENOME RESEARCH

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

(2008) V. Ter-Hovhannisyan et al.   GENOME RESEARCH

Sequencing and assembly of highly heterozygous genome of Vitis vinifera L. cv Pinot Noir: Problems and solutions

(2008) Andrey Zharkikh et al.   JOURNAL OF BIOTECHNOLOGY

Characterization of CsSEF1 gene encoding putative CCCH-type zinc finger protein expressed during cucumber somatic embryogenesis

(2008) Agnieszka Grabowska et al.   JOURNAL OF PLANT PHYSIOLOGY

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

(2008) J. CRISTOBAL VERA et al.   MOLECULAR ECOLOGY

On the relation between promoter divergence and gene expression evolution

(2008) Itay Tirosh et al.   Molecular Systems Biology

Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4

(2008) Marc Hanikenne et al.   NATURE

Chloroplast Signaling and LESION SIMULATING DISEASE1 Regulate Crosstalk between Light Acclimation and Immunity in Arabidopsis

(2008) P. Muhlenbock et al.   PLANT CELL

Antagonistic Interaction between Systemic Acquired Resistance and the Abscisic Acid-Mediated Abiotic Stress Response in Arabidopsis

(2008) M. Yasuda et al.   PLANT CELL

Construction and characterisation of a BAC library from Arabidopsis halleri: Evaluation of physical mapping based on conserved synteny with Arabidopsis thaliana

(2008) Eric Lacombe et al.   PLANT SCIENCE

Construction of a BAC library from cucumber (Cucumis sativus L.) and identification of linkage group specific clones

(2008) Yuan Guan et al.   Progress in Natural Science-Materials International

The Evolution of Combinatorial Gene Regulation in Fungi

(2008) Brian B Tuch et al.   PLOS BIOLOGY

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY

Starvation Induces Genomic Rearrangements and Starvation-Resilient Phenotypes in Yeast

(2007) S. Coyle et al.   MOLECULAR BIOLOGY AND EVOLUTION