Transcriptional dynamics of the developing sweet cherry (Prunus avium L.) fruit: sequencing, annotation and expression profiling of exocarp-associated genes

Diversity and distribution of plant metallothioneins: a review of structure, properties and functions

(2013) Oksana I. Leszczyszyn et al.   Metallomics

The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution

(2013) Ignazio Verde et al.   NATURE GENETICS

Intracuticular wax fixes and restricts strain in leaf and fruit cuticles

(2013) Bishnu Prasad Khanal et al.   NEW PHYTOLOGIST

Identification of putative candidate genes involved in cuticle formation in Prunus avium (sweet cherry) fruit

(2012) Merianne Alkio et al.   ANNALS OF BOTANY

Mayday - integrative analytics for expression data

(2012) Florian Battke et al.   BMC BIOINFORMATICS

Intronic RNAs constitute the major fraction of the non-coding RNA in mammalian cells

(2012) Georges St Laurent et al.   BMC GENOMICS

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

The identification of cutin synthase: formation of the plant polyester cutin

(2012) Trevor H Yeats et al.   Nature Chemical Biology

The tomato SlSHINE3 transcription factor regulates fruit cuticle formation and epidermal patterning

(2012) Jian Xin Shi et al.   NEW PHYTOLOGIST

CDD: conserved domains and protein three-dimensional structure

(2012) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Tomato GDSL1 Is Required for Cutin Deposition in the Fruit Cuticle

(2012) A.-L. Girard et al.   PLANT CELL

High-throughput sequencing-based gene profiling on multi-staged fruit development of date palm (Phoenix dactylifera, L.)

(2012) Yuxin Yin et al.   PLANT MOLECULAR BIOLOGY

Pleiotropic Phenotypes of the sticky peel Mutant Provide New Insight into the Role of CUTIN DEFICIENT2 in Epidermal Cell Function in Tomato

(2012) S. S. Nadakuduti et al.   PLANT PHYSIOLOGY

RNA-Seq Assembly – Are We There Yet?

(2012) Simon Schliesky et al.   Frontiers in Plant Science

Correcting errors in short reads by multiple alignments

(2011) L. Salmela et al.   BIOINFORMATICS

Berry skin development in Norton grape: Distinct patterns of transcriptional regulation and flavonoid biosynthesis

(2011) Mohammad B Ali et al.   BMC PLANT BIOLOGY

Exploring the Transcriptome Landscape of Pomegranate Fruit Peel for Natural Product Biosynthetic Gene and SSR Marker DiscoveryF

(2011) Nadia Nicole Ono et al.   Journal of Integrative Plant Biology

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Reorganizing the protein space at the Universal Protein Resource (UniProt)

(2011)   NUCLEIC ACIDS RESEARCH

Tissue- and Cell-Type Specific Transcriptome Profiling of Expanding Tomato Fruit Provides Insights into Metabolic and Regulatory Specialization and Cuticle Formation

(2011) Antonio J. Matas et al.   PLANT CELL

Potato Snakin-1 Gene Silencing Affects Cell Division, Primary Metabolism, and Cell Wall Composition

(2011) V. Nahirnak et al.   PLANT PHYSIOLOGY

Comparative transcript profiling of apricot (Prunus armeniaca L.) fruit development and on-tree ripening

(2011) George A. Manganaris et al.   Tree Genetics & Genomes

SHINE Transcription Factors Act Redundantly to Pattern the Archetypal Surface of Arabidopsis Flower Organs

(2011) Jian Xin Shi et al.   PLoS Genetics

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Use of homologous and heterologous gene expression profiling tools to characterize transcription dynamics during apple fruit maturation and ripening

(2010) Fabrizio Costa et al.   BMC PLANT BIOLOGY

An R2R3 MYB transcription factor associated with regulation of the anthocyanin biosynthetic pathway in Rosaceae

(2010) Kui Lin-Wang et al.   BMC PLANT BIOLOGY

Tissue-specific transcriptome profiling of the citrus fruit epidermis and subepidermis using laser capture microdissection

(2010) Antonio J. Matas et al.   JOURNAL OF EXPERIMENTAL BOTANY

Mining the surface proteome of tomato (Solanum lycopersicum) fruit for proteins associated with cuticle biogenesis

(2010) Trevor H. Yeats et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cloning and expression analysis of cDNAs for ABA 8′-hydroxylase during sweet cherry fruit maturation and under stress conditions

(2010) Jie Ren et al.   JOURNAL OF PLANT PHYSIOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

The genome of the domesticated apple (Malus × domestica Borkh.)

(2010) Riccardo Velasco et al.   NATURE GENETICS

PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database

(2010) He Zhang et al.   NUCLEIC ACIDS RESEARCH

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

QTL analysis and candidate gene mapping for skin and flesh color in sweet cherry fruit (Prunus avium L.)

(2010) Suneth S. Sooriyapathirana et al.   Tree Genetics & Genomes

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

PAVE: Program for assembling and viewing ESTs

(2009) Carol Soderlund et al.   BMC GENOMICS

ArabidopsisCER8encodes LONG-CHAIN ACYL-COA SYNTHETASE 1 (LACS1) that has overlapping functions with LACS2 in plant wax and cutin synthesis

(2009) Shiyou Lü et al.   PLANT JOURNAL

Cutin deficiency in the tomato fruit cuticle consistently affects resistance to microbial infection and biomechanical properties, but not transpirational water loss

(2009) Tal Isaacson et al.   PLANT JOURNAL

Nanoridges that characterize the surface morphology of flowers require the synthesis of cutin polyester

(2009) Y. Li-Beisson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Global gene expression analysis of apple fruit development from the floral bud to ripe fruit

(2008) Bart J Janssen et al.   BMC PLANT BIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Gene Expression and Metabolism in Tomato Fruit Surface Tissues

(2008) S. Mintz-Oron et al.   PLANT PHYSIOLOGY

Polyamines: essential factors for growth and survival

(2008) T. Kusano et al.   PLANTA

CTP synthetase and its role in phospholipid synthesis in the yeast Saccharomyces cerevisiae

(2008) Yu-Fang Chang et al.   PROGRESS IN LIPID RESEARCH

Comparative analysis of expressed sequence tags from tissues in ripening stages of peach (Prunus persica L. Batsch)

(2008) A. Vecchietti et al.   Tree Genetics & Genomes

Building lipid barriers: biosynthesis of cutin and suberin

(2008) Mike Pollard et al.   TRENDS IN PLANT SCIENCE