Origin and Evolution of Flavin-Based Electron Bifurcating Enzymes

H/D exchange mass spectrometry and statistical coupling analysis reveal a role for allostery in a ferredoxin-dependent bifurcating transhydrogenase catalytic cycle

(2018) Luke Berry et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

On the nature of organic and inorganic centers that bifurcate electrons, coupling exergonic and endergonic oxidation–reduction reactions

(2018) John W. Peters et al.   CHEMICAL COMMUNICATIONS

Flavin-Based Electron Bifurcation, A New Mechanism of Biological Energy Coupling

(2018) Wolfgang Buckel et al.   CHEMICAL REVIEWS

Native metals, electron bifurcation, and CO 2 reduction in early biochemical evolution

(2018) Filipa L Sousa et al.   CURRENT OPINION IN MICROBIOLOGY

Electron Transfer to Nitrogenase in Different Genomic and Metabolic Backgrounds

(2018) Saroj Poudel et al.   JOURNAL OF BACTERIOLOGY

On the Natural History of Flavin-Based Electron Bifurcation

(2018) Frauke Baymann et al.   Frontiers in Microbiology

Flavin-Based Electron Bifurcation, Ferredoxin, Flavodoxin, and Anaerobic Respiration With Protons (Ech) or NAD+ (Rnf) as Electron Acceptors: A Historical Review

(2018) Wolfgang Buckel et al.   Frontiers in Microbiology

Defining Electron Bifurcation in the Electron-Transferring Flavoprotein Family

(2017) Amaya M. Garcia Costas et al.   JOURNAL OF BACTERIOLOGY

Two functionally distinct NADP + -dependent ferredoxin oxidoreductases maintain the primary redox balance of Pyrococcus furiosus

(2017) Diep M. N. Nguyen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Mechanistic insights into energy conservation by flavin-based electron bifurcation

(2017) Carolyn E Lubner et al.   Nature Chemical Biology

The deep, hot biosphere: Twenty-five years of retrospection

(2017) Daniel R. Colman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Ferredoxin- and F 420 H 2 -Dependent, Electron-Bifurcating, Heterodisulfide Reductase with Homologs in the Domains Bacteria and Archaea

(2017) Zhen Yan et al.   mBio

The semiquinone swing in the bifurcating electron transferring flavoprotein/butyryl-CoA dehydrogenase complex from Clostridium difficile

(2017) Julius K. Demmer et al.   Nature Communications

Discovery of extremely halophilic, methyl-reducing euryarchaea provides insights into the evolutionary origin of methanogenesis

(2017) Dimitry Y. Sorokin et al.   Nature Microbiology

Electron Bifurcation: A Long-Hidden Energy-Coupling Mechanism

(2016) Volker Müller et al.   Annual Review of Microbiology

The role of geochemistry and energetics in the evolution of modern respiratory complexes from a proton-reducing ancestor

(2016) Gerrit J. Schut et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Unification of [FeFe]-hydrogenases into three structural and functional groups

(2016) Saroj Poudel et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Electron bifurcation

(2016) John W Peters et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Microbialite response to an anthropogenic salinity gradient in Great Salt Lake, Utah

(2016) M. R. Lindsay et al.   Geobiology

cooccur: Probabilistic Species Co-Occurrence Analysis inR

(2016) Daniel M. Griffith et al.   Journal of Statistical Software

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Thermophilic archaea activate butane via alkyl-coenzyme M formation

(2016) Rafael Laso-Pérez et al.   NATURE

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota

(2016) Inka Vanwonterghem et al.   Nature Microbiology

The physiology and habitat of the last universal common ancestor

(2016) Madeline C. Weiss et al.   Nature Microbiology

A new view of the tree of life

(2016) Laura A. Hug et al.   Nature Microbiology

Distribution and activity of anaerobic ammonium-oxidising bacteria in natural freshwater wetland soils

(2015) Li-dong Shen et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

[FeFe]- and [NiFe]-hydrogenase diversity, mechanism, and maturation

(2015) John W. Peters et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survival

(2015) Chris Greening et al.   ISME Journal

Heterotrimeric NADH-Oxidizing Methylenetetrahydrofolate Reductase from the Acetogenic Bacterium Acetobacterium woodii

(2015) Johannes Bertsch et al.   JOURNAL OF BACTERIOLOGY

Evolution of Molybdenum Nitrogenase during the Transition from Anaerobic to Aerobic Metabolism

(2015) Eric S. Boyd et al.   JOURNAL OF BACTERIOLOGY

Insights into Flavin-based Electron Bifurcation via the NADH-dependent Reduced Ferredoxin:NADP Oxidoreductase Structure

(2015) Julius K. Demmer et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Presence of oxygen and aerobic communities from sea floor to basement in deep-sea sediments

(2015) Steven D’Hondt et al.   Nature Geoscience

Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics

(2015) P. N. Evans et al.   SCIENCE

The universal tree of life: an update

(2015) Patrick Forterre   Frontiers in Microbiology

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

A novel mode of lactate metabolism in strictly anaerobic bacteria

(2014) Marie Charlotte Weghoff et al.   ENVIRONMENTAL MICROBIOLOGY

Evidence for a Hexaheteromeric Methylenetetrahydrofolate Reductase in Moorella thermoacetica

(2014) J. Mock et al.   JOURNAL OF BACTERIOLOGY

The rise of oxygen in Earth’s early ocean and atmosphere

(2014) Timothy W. Lyons et al.   NATURE

Clostridium acidurici Electron-Bifurcating Formate Dehydrogenase

(2013) Shuning Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

VhuD Facilitates Electron Flow from H2 or Formate to Heterodisulfide Reductase in Methanococcus maripaludis

(2013) K. C. Costa et al.   JOURNAL OF BACTERIOLOGY

NADP-Specific Electron-Bifurcating [FeFe]-Hydrogenase in a Functional Complex with Formate Dehydrogenase in Clostridium autoethanogenum Grown on CO

(2013) S. Wang et al.   JOURNAL OF BACTERIOLOGY

Studies on the Mechanism of Electron Bifurcation Catalyzed by Electron Transferring Flavoprotein (Etf) and Butyryl-CoA Dehydrogenase (Bcd) ofAcidaminococcus fermentans

(2013) Nilanjan Pal Chowdhury et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Ferredoxin:NAD+Oxidoreductase (Rnf) from the AcetogenAcetobacterium woodiiRequires Na+and Is Reversibly Coupled to the Membrane Potential

(2013) Verena Hess et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

An Electron-bifurcating Caffeyl-CoA Reductase

(2013) Johannes Bertsch et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

New insights into the evolutionary history of biological nitrogen fixation

(2013) Eric S. Boyd et al.   Frontiers in Microbiology

The Deep, Dark Energy Biosphere: Intraterrestrial Life on Earth

(2012) Katrina J. Edwards et al.   Annual Review of Earth and Planetary Sciences

“Methanoplasmatales,” Thermoplasmatales-Related Archaea in Termite Guts and Other Environments, Are the Seventh Order of Methanogens

(2012) Kristina Paul et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Energy conservation via electron bifurcating ferredoxin reduction and proton/Na+ translocating ferredoxin oxidation

(2012) Wolfgang Buckel et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

A Bacterial Electron-bifurcating Hydrogenase

(2012) Kai Schuchmann et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Redox bifurcations: Mechanisms and importance to life now, and at its origin

(2011) Wolfgang Nitschke et al.   BIOESSAYS

Hydrogen, metals, bifurcating electrons, and proton gradients: The early evolution of biological energy conservation

(2011) William F. Martin   FEBS LETTERS

A late methanogen origin for molybdenum-dependent nitrogenase

(2011) E. S. BOYD et al.   Geobiology

A novel regulatory role of the Rnf complex of Azoarcus sp. strain BH72

(2011) Abhijit Sarkar et al.   MOLECULAR MICROBIOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

IMG: the integrated microbial genomes database and comparative analysis system

(2011) V. M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Coupling of ferredoxin and heterodisulfide reduction via electron bifurcation in hydrogenotrophic methanogenic archaea

(2011) A.-K. Kaster et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Alternative Path for the Evolution of Biological Nitrogen Fixation

(2011) Eric S. Boyd et al.   Frontiers in Microbiology

Hydrogenases from Methanogenic Archaea, Nickel, a Novel Cofactor, and H2Storage

(2010) Rudolf K. Thauer et al.   Annual Review of Biochemistry

Biochemistry, evolution and physiological function of the Rnf complex, a novel ion-motive electron transport complex in prokaryotes

(2010) Eva Biegel et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

A thermophilic bacterial origin and subsequent constraints by redox, light and salinity on the evolution of the microbial mercuric reductase

(2010) Tamar Barkay et al.   ENVIRONMENTAL MICROBIOLOGY

Quantifying inorganic sources of geochemical energy in hydrothermal ecosystems, Yellowstone National Park, USA

(2010) Everett L. Shock et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

NADP+ Reduction with Reduced Ferredoxin and NADP+ Reduction with NADH Are Coupled via an Electron-Bifurcating Enzyme Complex in Clostridium kluyveri

(2010) S. Wang et al.   JOURNAL OF BACTERIOLOGY

The surprising diversity of clostridial hydrogenases: a comparative genomic perspective

(2010) M. Calusinska et al.   MICROBIOLOGY-SGM

Stepwise [FeFe]-hydrogenase H-cluster assembly revealed in the structure of HydAΔEFG

(2010) David W. Mulder et al.   NATURE

Protein complexing in a methanogen suggests electron bifurcation and electron delivery from formate to heterodisulfide reductase

(2010) K. C. Costa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Iron-Hydrogenase of Thermotoga maritima Utilizes Ferredoxin and NADH Synergistically: a New Perspective on Anaerobic Hydrogen Production

(2009) G. J. Schut et al.   JOURNAL OF BACTERIOLOGY

Methanogenesis byMethanosarcina acetivoransinvolves two structurally and functionally distinct classes of heterodisulfide reductase

(2009) Nicole R. Buan et al.   MOLECULAR MICROBIOLOGY

Hydrothermal vents and the origin of life

(2008) William Martin et al.   NATURE REVIEWS MICROBIOLOGY

Methanogenic archaea: ecologically relevant differences in energy conservation

(2008) Rudolf K. Thauer et al.   NATURE REVIEWS MICROBIOLOGY