- Home
- Publications
- Publication Search
- Publication Details
Title
The universal tree of life: an update
Authors
Keywords
-
Journal
Frontiers in Microbiology
Volume 6, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2015-07-21
DOI
10.3389/fmicb.2015.00717
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Extending the Conserved Phylogenetic Core of Archaea Disentangles the Evolution of the Third Domain of Life
- (2015) Céline Petitjean et al. MOLECULAR BIOLOGY AND EVOLUTION
- Complex archaea that bridge the gap between prokaryotes and eukaryotes
- (2015) Anja Spang et al. NATURE
- The two-domain tree of life is linked to a new root for the Archaea
- (2015) Kasie Raymann et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bacterial proteins pinpoint a single eukaryotic root
- (2015) Romain Derelle et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Lokiarchaeota: eukaryote-like missing links from microbial dark matter?
- (2015) Arshan Nasir et al. TRENDS IN MICROBIOLOGY
- MitoCOGs: clusters of orthologous genes from mitochondria and implications for the evolution of eukaryotes
- (2014) Sivakumar Kannan et al. BMC EVOLUTIONARY BIOLOGY
- Concatenated alignments and the case of the disappearing tree
- (2014) Thorsten Thiergart et al. BMC EVOLUTIONARY BIOLOGY
- An Alternative Root for the Eukaryote Tree of Life
- (2014) Ding He et al. CURRENT BIOLOGY
- Cross Kingdom Functional Conservation of the Core Universally Conserved Threonylcarbamoyladenosine tRNA Synthesis Enzymes
- (2014) Patrick C. Thiaville et al. EUKARYOTIC CELL
- Gene Content Evolution in Discobid Mitochondria Deduced from the Phylogenetic Position and Complete Mitochondrial Genome of Tsukubamonas globosa
- (2014) Ryoma Kamikawa et al. Genome Biology and Evolution
- Global Phylogenomic Analysis Disentangles the Complex Evolutionary History of DNA Replication in Archaea
- (2014) Kasie Raymann et al. Genome Biology and Evolution
- Archaeal “Dark Matter” and the Origin of Eukaryotes
- (2014) Tom A. Williams et al. Genome Biology and Evolution
- Rooting the Domain Archaea by Phylogenomic Analysis Supports the Foundation of the New Kingdom Proteoarchaeota
- (2014) Céline Petitjean et al. Genome Biology and Evolution
- ‘Geoarchaeote NAG1’ is a deeply rooting lineage of the archaeal order Thermoproteales rather than a new phylum
- (2014) Lionel Guy et al. ISME Journal
- The Relative Ages of Eukaryotes and Akaryotes
- (2014) David Penny et al. JOURNAL OF MOLECULAR EVOLUTION
- Phylogenomic Test of the Hypotheses for the Evolutionary Origin of Eukaryotes
- (2014) Nicolas C. Rochette et al. MOLECULAR BIOLOGY AND EVOLUTION
- Ribosomal proteins: Toward a next generation standard for prokaryotic systematics?
- (2014) Hemalatha Golaconda Ramulu et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- The hybrid nature of the Eukaryota and a consilient view of life on Earth
- (2014) James O. McInerney et al. NATURE REVIEWS MICROBIOLOGY
- A highly divergent archaeo-eukaryotic primase from the Thermococcus nautilus plasmid, pTN2
- (2014) Sukhvinder Gill et al. NUCLEIC ACIDS RESEARCH
- Metabolic Evolution of a Deep-Branching Hyperthermophilic Chemoautotrophic Bacterium
- (2014) Rogier Braakman et al. PLoS One
- The Candidate Phylum Poribacteria by Single-Cell Genomics: New Insights into Phylogeny, Cell-Compartmentation, Eukaryote-Like Repeat Proteins, and Other Genomic Features
- (2014) Janine Kamke et al. PLoS One
- Cellular domains and viral lineages
- (2014) Patrick Forterre et al. TRENDS IN MICROBIOLOGY
- The Dispersed Archaeal Eukaryome and the Complex Archaeal Ancestor of Eukaryotes
- (2014) E. V. Koonin et al. Cold Spring Harbor Perspectives in Biology
- Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface
- (2014) Alexander J. Probst et al. Nature Communications
- From archaeon to eukaryote: the evolutionary dark ages of the eukaryotic cell
- (2013) Joran Martijn et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- Rooted phylogeny of the three superkingdoms
- (2013) Ajith Harish et al. BIOCHIMIE
- The molecular signal for the adaptation to cold temperature during early life on Earth
- (2013) M. Groussin et al. Biology Letters
- Seeing the Tree of Life behind the phylogenetic forest
- (2013) Pere Puigbò et al. BMC BIOLOGY
- Being Aquifex aeolicus: Untangling a Hyperthermophile’s Checkered Past
- (2013) Robert J.M. Eveleigh et al. Genome Biology and Evolution
- Phylogenomic Data Support a Seventh Order of Methylotrophic Methanogens and Provide Insights into the Evolution of Methanogenesis
- (2013) Guillaume Borrel et al. Genome Biology and Evolution
- Strikingly Bacteria-Like and Gene-Rich Mitochondrial Genomes throughout Jakobid Protists
- (2013) Gertraud Burger et al. Genome Biology and Evolution
- Why Are There So Many Diverse Replication Machineries?
- (2013) Patrick Forterre JOURNAL OF MOLECULAR BIOLOGY
- The effects of model choice and mitigating bias on the ribosomal tree of life
- (2013) Erica Lasek-Nesselquist et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Insights into the phylogeny and coding potential of microbial dark matter
- (2013) Christian Rinke et al. NATURE
- An archaeal origin of eukaryotes supports only two primary domains of life
- (2013) Tom A. Williams et al. NATURE
- The legacy of Carl Woese and Wolfram Zillig: from phylogeny to landmark discoveries
- (2013) Sonja-Verena Albers et al. NATURE REVIEWS MICROBIOLOGY
- Functional assignment of KEOPS/EKC complex subunits in the biosynthesis of the universal t 6 A tRNA modification
- (2013) Ludovic Perrochia et al. NUCLEIC ACIDS RESEARCH
- Reconstitution and characterization of eukaryotic N6-threonylcarbamoylation of tRNA using a minimal enzyme system
- (2013) Leo C. K. Wan et al. NUCLEIC ACIDS RESEARCH
- Insights into Dynamics of Mobile Genetic Elements in Hyperthermophilic Environments from Five New Thermococcus Plasmids
- (2013) Mart Krupovic et al. PLoS One
- Metagenomics of Kamchatkan hot spring filaments reveal two new major (hyper)thermophilic lineages related to Thaumarchaeota
- (2013) Laura Eme et al. RESEARCH IN MICROBIOLOGY
- The Common Ancestor of Archaea and Eukarya Was Not an Archaeon
- (2013) Patrick Forterre ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL
- Quantitative and phylogenetic study of the Deep Sea Archaeal Group in sediments of the Arctic mid-ocean spreading ridge
- (2013) Steffen L. Jørgensen et al. Frontiers in Microbiology
- Biosynthesis of Threonylcarbamoyl Adenosine (t6A), a Universal tRNA Nucleoside
- (2012) Christopher Deutsch et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- In vitro biosynthesis of a universal t6A tRNA modification in Archaea and Eukarya
- (2012) Ludovic Perrochia et al. NUCLEIC ACIDS RESEARCH
- Phylogenomics of Prokaryotic Ribosomal Proteins
- (2012) Natalya Yutin et al. PLoS One
- Darwin's goldmine is still open: variation and selection run the world
- (2012) Patrick Forterre Frontiers in Cellular and Infection Microbiology
- Regarding the presence of membrane coat proteins in bacteria: Confusion? What confusion?
- (2011) Damien P. Devos BIOESSAYS
- Planctomycetes and eukaryotes: A case of analogy not homology
- (2011) James O. McInerney et al. BIOESSAYS
- Phylogeny and evolution of the Archaea: one hundred genomes later
- (2011) Celine Brochier-Armanet et al. CURRENT OPINION IN MICROBIOLOGY
- De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities
- (2011) Priya Narasingarao et al. ISME Journal
- Adaptation to Environmental Temperature Is a Major Determinant of Molecular Evolutionary Rates in Archaea
- (2011) M. Groussin et al. MOLECULAR BIOLOGY AND EVOLUTION
- The archaeal ‘TACK’ superphylum and the origin of eukaryotes
- (2011) Lionel Guy et al. TRENDS IN MICROBIOLOGY
- Origin of the cell nucleus, mitosis and sex: roles of intracellular coevolution
- (2010) Thomas Cavalier-Smith Biology Direct
- The Genome of Naegleria gruberi Illuminates Early Eukaryotic Versatility
- (2010) Lillian K. Fritz-Laylin et al. CELL
- The Evolutionary History of Archaeal MCM Helicases: A Case Study of Vertical Evolution Combined with Hitchhiking of Mobile Genetic Elements
- (2010) M. Krupovic et al. MOLECULAR BIOLOGY AND EVOLUTION
- Large colonial organisms with coordinated growth in oxygenated environments 2.1 Gyr ago
- (2010) Abderrazak El Albani et al. NATURE
- The energetics of genome complexity
- (2010) Nick Lane et al. NATURE
- Evolution of diverse cell division and vesicle formation systems in Archaea
- (2010) Kira S. Makarova et al. NATURE REVIEWS MICROBIOLOGY
- The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse?
- (2010) Simonetta Gribaldo et al. NATURE REVIEWS MICROBIOLOGY
- Two novel families of plasmids from hyperthermophilic archaea encoding new families of replication proteins
- (2010) Nicolas Soler et al. NUCLEIC ACIDS RESEARCH
- Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group
- (2010) Takuro Nunoura et al. NUCLEIC ACIDS RESEARCH
- Bacteria with a eukaryotic touch: A glimpse of ancient evolution?
- (2010) P. Forterre et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- On the last common ancestor and early evolution of eukaryotes: reconstructing the history of mitochondrial ribosomes
- (2010) Elie Desmond et al. RESEARCH IN MICROBIOLOGY
- A new fusion hypothesis for the origin of Eukarya: better than previous ones, but probably also wrong
- (2010) Patrick Forterre RESEARCH IN MICROBIOLOGY
- Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota
- (2010) Anja Spang et al. TRENDS IN MICROBIOLOGY
- The Compartmentalized Bacteria of the Planctomycetes-Verrucomicrobia-Chlamydiae Superphylum Have Membrane Coat-Like Proteins
- (2010) Rachel Santarella-Mellwig et al. PLOS BIOLOGY
- Streamlining and Large Ancestral Genomes in Archaea Inferred with a Phylogenetic Birth-and-Death Model
- (2009) M. Csuros et al. MOLECULAR BIOLOGY AND EVOLUTION
- Phylogenomics of DNA topoisomerases: their origin and putative roles in the emergence of modern organisms
- (2009) P. Forterre et al. NUCLEIC ACIDS RESEARCH
- On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales
- (2009) O. Zhaxybayeva et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Phylogeny of prokaryotes: does it exist and why should we care?
- (2009) Simonetta Gribaldo et al. RESEARCH IN MICROBIOLOGY
- Horizontal gene transfer and the earliest stages of the evolution of life
- (2009) Anthony M. Poole RESEARCH IN MICROBIOLOGY
- The Last Universal Common Ancestor: emergence, constitution and genetic legacy of an elusive forerunner
- (2008) Nicolas Glansdorff et al. Biology Direct
- A DNA topoisomerase IB in Thaumarchaeota testifies for the presence of this enzyme in the last common ancestor of Archaea and Eucarya
- (2008) Céline Brochier-Armanet et al. Biology Direct
- Accounting for horizontal gene transfers explains conflicting hypotheses regarding the position of aquificales in the phylogeny of Bacteria
- (2008) Bastien Boussau et al. BMC EVOLUTIONARY BIOLOGY
- Parallel adaptations to high temperatures in the Archaean eon
- (2008) Bastien Boussau et al. NATURE
- Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota
- (2008) Céline Brochier-Armanet et al. NATURE REVIEWS MICROBIOLOGY
- Redefining viruses: lessons from Mimivirus
- (2008) Didier Raoult et al. NATURE REVIEWS MICROBIOLOGY
- The archaebacterial origin of eukaryotes
- (2008) C. J. Cox et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Tracking microbial biodiversity through molecular and genomic ecology
- (2007) Purificación López-García et al. RESEARCH IN MICROBIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started